Gene detail

Detail information of GWHGAAEX001403/evm.TU.scaffold_109.46

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108758058\|ref\|YP_634107.1\|	7.00E-34	DNA helicase [Myxococcus xanthus DK 1622]
KOG	KOG1801	0	tRNA-splicing endonuclease positive effector (SEN1)
nr	gi\|743885392\|ref\|XP_010909910.1\|	0	PREDICTED: helicase SEN1-like [Elaeis guineensis]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	2.00E-48	Probable helicase MAGATAMA 3
trEMBL	tr\|M0SS06\|M0SS06_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25450_001}
TAIR	AT1G65810	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	1373196	1387974	-

Transcript Sequence
>GWHTAAEX001403 ATGGCGGAGGGGAACAATGGCGTTGGAAACAGAGAGCCGAAGGAATCGAAAGAACTTTTCGAGAATAAAATCTTCTCATGGTCTCTCGAAGATATCTACAACGATCAGTTATTCAGTGACAAGGTGAAGGAGATACCAAAAGTTTGGGGCACTGAGAAGACATACCGAGCTTCATTTGTCTTTCCTTTAATAGAAGAAGTTCGCACAGACCTACAGTCTGCTCTGGAAGCAATCGGAGGAGCACCTTACACCATAATGCAGCCAATTCATAAGCTATCCAAGAATCTATATACTGCTATCCTTTATGATTCAAGTCAGGGATCGGGTGGTTTCCATGAGGCCGCGGCCAACGATTTATTTGTCTTAACGACGTACAGAAGGCCCAGCCACGTCTCTGAATTAAGCAGCAGCGATGGCTCTCACTGCATTCTTGTCTTAGTTCAAAAAAAATTAGCTCTTCATGGATACCCGTCAAATCATTACAGAGTTAAGACCTCAAAGGAGATTGATTTTGGCGGTTTCAGTAAAACGGGTGAATCTGCAAAGCATGCGAGCTTTTTTGCTACGCTATTGATTAATTTGACTGCGTGGGAACGCATTTGGAATGCGCTTCACACGAATGGGAGCATGAAGATCATTGAGCAGCTGCTGCAGCCTCTGGATTCTGATGATACAAAAAGCGTAACTTCTGCGGAAGCAGTTAGAAACATCTCAACTTTAAAAATAGGAAAGAGCTTGCAGCCTTTTAAGCTCAATGAGGCTCAATCAAAAGCAATATTAAGCTGTATTGCCTCAAAGGGTTCGGATGAGAAAGGTTCAATCAACCTGATATGGGGTCCTCCAGGCACCGGAAAAACTAAAACTTTAGCAACTCTGCTGTGTAAATTACAGGCTATGAAGTGCAGAACAGTAGCCTGTGCTCCTACTAATACTGCAATTAGAGAAGTTGCATCACGCCTTGTAAAATTGATCAAGGAGAATGTTACTGGTGGTGATGTTCTATTGCAAGATGTTGTCCTCTTTGGAAACCACAATCGGTTGAAAATTGATAAGGATCTTCGACAAGTGTTCTTGGATTGTCGTGTTGAAATACTCCTGGGCTGCTTTAATCCAGTTACTGGTTGGAAGCATTGCTTACTTGGAATGGAGAATTTCTTAAAAAGGTGCTTGAATTTGTACCAAAAGTATCTGTCAGATGTAAAAGAGTGCAACAGTGAAGCAATTGCAATTATTCTCAGGGTCTTAGTTAAAAGTGAATACCTTCACGTGAAGAACAAGTTGACGAAATTCTTGAAGACTTTGTGTAGGCATTTTCCAAGATCTTCCATTTCCGGTGAAAATTGGAAGAAAATAAGACATCTGCAAAATTTACTTAACAGGTTTTGGAGCAATAGAAATAAGATAATCAAAATTGTTTTGAACGAAGTTTTGCAAAATTTATGGGAAACTCTACAAATATTACGTGATCTTATTAACAAGTTAAAACTCCCTTTAACAAAAAAATATAATGTTGTGAAAATTTTTATTTTGCGGCATTGTTCATTGTACTTCTGTACGGCTTCGAGCTCCATCAAATTATGCAAAATAAAAAAGATGAAATCTTTGGAATGTCTTGTGATTGATGAAGCGGGACAGTTGAAGGAGTGTGAATCACTGATCTCCTTGCATCTTCCAGGCATTAGGCACACTGTCCTCATTGGCGACGAGCGTCAGCTACCAGCACTGGTTAAGAGTAAGATGTCAGCTAGTGCAATGTTTGGAAGGAGTTTGTTCGAGAGGTTGAGCTTACTTGGGCACAAAAAGCATCTTCTCAACATGCAGTACAGAATGCATCCTTCCATAAGCATTTTTCCAAATAAAAATTTTTATAGCAATCAAATCATAGATGCGCCTAAGGTTCTTGATAAGGAATATGAGAGGCATTACCTTCCTGGGCGAATGTTCGGGGCCTATTCCTTTATTAACATTGAAGAAGGAAAAGAGACTTTTGATGAATTAGGACATAGTCTAAAGAATATGGTGGAAGTTGCAGTTATATTGCAAATATTGAAAAAACTTCATGAAGCAACTATTAAACTCAAACAAAAGATTAGTATTGGCATTATATGTCCCTACAAAGCACAAGTTCTAGCATTTGAAGAAAAAATTGGAAAAGCTTACAAGTTTCAGACTGATTTTACTGTGAAAGTAAGCTCAGTTGATGGTTTCCAAGGTAGTGAAGAAGATGTTATACTTCTTTCTACTGTTAGGTCCAATTGCCATGGATCTGTTGGTTTTCTTTCTGATCTACAGCGCACTAATGTGGCTTTGACTAGAGCAAGACATTGTCTTTGGATATTTGGAAATGGGCCAACATTAGAAAGCAGTGGATCAATTTGGGGAGAACTGGTTCATGATGCAAAAAATCATGGCTTCTTCTTCGACGCAAAAGAAAATGAAAGCATCCGTAATTCCATCACAAATGCATGCATTGAGTTGGGTCAAATTGAATCATTGCTATGCATGGACTCCTTGCACATTAGCAAGAGTCGTCACAAGCAAGTGATGGAACCACATAGTGGATGGCATAGCCACGGAGCGACTGAAGGAGCTGCAGAGCGAAGAGGCCGGGAAAGTCGCAAGACAACTAGCATGGCTACTGCTAGCATGCTGCGGAAGCTTTTGAAAGTTGTTCCAAGTAATGGAGATTGCGTGCCTTGA

Network for GWHGAAEX001403

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13086.5	AAA_11	250	579	3.80E-33
PF13087.5	AAA_12	587	782	6.10E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.630
SRP064423	SRR2545915	Juvenile tuber	2.270
SRP108465	SRR5643513	five period of Gastrodia elata	1.640
	SRR5643514	five period of Gastrodia elata	1.810
	SRR5643515	five period of Gastrodia elata	2.420
	SRR5643524	five period of Gastrodia elata	2.350
	SRR5643525	five period of Gastrodia elata	1.180
	SRR5643528	five period of Gastrodia elata	1.790
	SRR5643658	five period of Gastrodia elata	1.840
	SRR5643659	five period of Gastrodia elata	1.950
	SRR5643660	five period of Gastrodia elata	1.740
	SRR5643661	five period of Gastrodia elata	1.310
	SRR5643662	five period of Gastrodia elata	1.430
	SRR5643663	five period of Gastrodia elata	1.700
	SRR5643664	five period of Gastrodia elata	1.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.580
SRP279888	Gastro	Gastrodia elata tuber	2.71
	Juven	Juvenile tuber	2.39
	Mother_Gastro	Mother tuber of Gastrodia elata	4.15
	Mother_Juven	Mother tuber of Juvenile	3.25