Detail information of GWHGAAEX001405/evm.TU.scaffold_109.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219849089|ref|YP_002463522.1|5.00E-25small GTP-binding protein [Chloroflexus aggregans DSM 9485]
KOGKOG00923.00E-116GTPase Rab5/YPT51 and related small G protein superfamily GTPases
nrgi|672112144|ref|XP_008804271.1|7.46E-134PREDICTED: ras-related protein RHN1 [Phoenix dactylifera]
Swissprottr|P31583|RHN1_NICPL4.00E-125Ras-related protein RHN1
trEMBLtr|A5AX18|A5AX18_VITVI5.00E-132Putative uncharacterized protein {ECO:0000313|EMBL:CAN67253.1}
TAIRAT4G196403.00E-116Ras-related small GTP-binding family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011414086321448258-
Transcript Sequence

Network for GWHGAAEX001405

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras121718.20E-60
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms98.320
SRR2545915Juvenile tuber118.400
SRP108465SRR5643513five period of Gastrodia elata111.080
SRR5643514five period of Gastrodia elata140.020
SRR5643515five period of Gastrodia elata117.590
SRR5643524five period of Gastrodia elata137.390
SRR5643525five period of Gastrodia elata222.870
SRR5643528five period of Gastrodia elata200.710
SRR5643658five period of Gastrodia elata219.990
SRR5643659five period of Gastrodia elata113.310
SRR5643660five period of Gastrodia elata135.840
SRR5643661five period of Gastrodia elata125.790
SRR5643662five period of Gastrodia elata139.820
SRR5643663five period of Gastrodia elata121.010
SRR5643664five period of Gastrodia elata141.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1132.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1126.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1131.890
SRR6049657Rhizomagastrodiae_C368-T07_good_1124.900
SRR6049658Rhizomagastrodiae_C368-T04_good_1143.790
SRR6049659Rhizomagastrodiae_C368-T04_good_1179.230
SRR6049660Rhizomagastrodiae_C368-T01_good_1131.870
SRR6049661Rhizomagastrodiae_C368-T04_good_1136.630
SRR6049662Rhizomagastrodiae_C368-T01_good_1133.660
SRR6049663Rhizomagastrodiae_C368-T01_good_1152.300
SRR6049664Rhizomagastrodiae_C368-T10_good_1167.410
SRR6049665Rhizomagastrodiae_C368-T10_good_1167.410
SRP279888GastroGastrodia elata tuber 135.76
JuvenJuvenile tuber139.44
Mother_GastroMother tuber of Gastrodia elata 130.44
Mother_JuvenMother tuber of Juvenile 123.25