Gene detail

Detail information of GWHGAAEX001406/evm.TU.scaffold_109.49

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108763874\|ref\|YP_633501.1\|	1.00E-69	SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
KOG	KOG0389	0	SNF2 family DNA-dependent ATPase
nr	gi\|672181704\|ref\|XP_008811078.1\|	0	PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9ZUL5\|CHR19_ARATH	0	Protein CHROMATIN REMODELING 19 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|M0SS54\|M0SS54_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25930_001}
TAIR	AT2G02090	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	1472920	1503230	+

Transcript Sequence
>GWHTAAEX001406 GCGCTTGGATGATTTTTGGGTACATGATCGCCAAACGGCTAAAAATTCCTGCAGATTTCCAAATTCACTCCGCGTTCCTTCTCCGCGGCTTTCGGAAACTCCATAAGCTCACCTTTAAAGTCTCGAGCCATAAACTGATTGTCTTCACCAGCTCTTCCGGCAGTTTACACCCTATCTCTTCCCTCATTTTCTCAATTCCAGAACTAAGAGCTAGCCATAATCTTCCATATGAGACGCGCCTTTGACGAAATCTCCGACGAAGAATGGGAGAACCACACCTTTAAGCCCTCAACAGTTCTCAAAAAAGGGAGGGCTGCCCCTCCACCATCGATTGAATCCTTTGCTTACCGCCCCAAAAGTTATGCCTGCTCAAACCATGACAGCATAGGTTGGCCGAATGTGGTGAATTTGGAGGACGACGATGAAGACGAAAATGAGGAAGAAGTCATACCGGTGACAAGGCCATCGCTTAGAAATCGTGGTCGGCGATACATTGTGAACGAGGACAGCGGTACTGAGGGTTGGGATGATGTGATTGAAGTTCAACCGATGGAGAAGGAGGATGAGGAAGAGTTTTCATTTGGTTCAGAGGAGGAAAGGGATGAGGAAGACAAATGGGAAAATAACGAGTTTGATGTAGTCGGCAAAGCCTTGCACAAGTGCGCAAAAATATCCGCGGATTTGAGGCGGGAGTTATATGGTTCCTCTGCTTTAGCTTGTGATAGATATGCGGAAGTGGATGCTTCTTCTGCTAGGATTGTAACTCAGGAAGATATTGACGAGGCCTGTGCGGGCAAAGATTTGGACTTTGAACCGAACCTAAAGCCTTATCAGCTTGTCGGTGTTAATTTCCTCTTATTGTTATACAGAAAGAATATTGGCGGCGCCATATTGGCAGATGAGATGGGGCTCGGTAAGACTGTGCAGGCTGTTACATACTTAACTCTGCTGAAACATCTAAATGATGATTCTGGTCCCCATTTAATTGTATGCCCAGCTTCGGTCTTAGAGAATTGGGAGAGAGAATTGAAAAGGTGGTGCCCATCATTTTATATTATCTTATTTCATGGAACTGGAAGGGCGGCCTATTCAAAAGAATTGAGCTCTGTGCTCAAAGCTGGTTTACCACCAACTTTCAATGTTATACTTACAAGCTACTCACTTTTTGAAAGACGCAGTTCACAGCAGAGAGATGACCGTAAGTTGCTGAAACGGTGGCATTGGAGCTGCATAATTTTAGATGAAGCTCATGTTATGAAAGATAAAAGTAGTTATCGTTGGAAGAACCTTATGTCAGCTGCAAAAGGTGCTCGTCAGCGTCTATTGTTGACTGGAACACCTCTTCAAAATGATTTGCATGAATTGTGGTCGTTGCTGGAATTTATGATGCCTGATATTTTTACAACTGGAGACATTGATTTAAAAAAGTTGCTGAATGCAGAAGATACTAATTTAATTCCTCGTATCAAATCCATTTTAGGCCCATTTATTCTAAGACGCTTAAAATCTGATGTGATGCAGCAACTTGTACCAAAGATACAGCATGTTGAGTATGTTGTAATGAGTAAGGAACAATCTGCAGCATACAATGATGCCATAAGTGAATATCGTGCAGCTTCTGCAGCTCGTACTATGAAATCTTCCGATAAGATGACAAATGATGCTTATAGCCTTTTTCCTAGTCGTCAAATATCCAATTATTTTATGCAGTTTCGTAAGATTGCAAATCATCCCCTACTTGTTAGGCGTATTTATTCTGATGAAGATGTTATTCGTATTGCTAAAACATTATACCCAAAGGGTGTATTTGGCTTTGAATGTTCCATCGAGAGAGCCATTCAAGAAATGAATGGCTACAATGATTTTTCCATTCATAGGCTTTTATTATTATATTCTGATGCGGGTGCTAAGGATGTTCTTACTAATGAACATGCTCTGGGATCGGCAAAATGTCAGGTGTTAGCAGAACTTCTACCTCGTTTAAGCGTTGAAGGCCATAGGGTTCTTATATTCAGTCAATGGACTACAATGCTTGACATACTTGAATGGGCATTGGAAGTCATAGGAGTTACGTACAGACGTCTTGATGGAAGTACTCAGGTAACTGAGAGGCAATCCATTGTAGATACATTCAACAACGATCTTTCAATATTTGCATGTTTGCTTTCAACGAGGGCTGGCGGTCAGGGGCTGAACTTAATTGGTGCCGATACGGTCATTATACATGACATGGATTTTAACCCTCAAATGGATCGCCAAGCTGAAGACAGATGTCATAGAATAGGACAATCTAAGCCTGTTACAATATACAGGCTTGTGACTAAAGGAACTGTTGATGAAAACATATATGAAATTGCCAGACGGAAGTTAGTTTTGGATGCTGCTGTCTTGGAGTCTGGAACAGGCTTAGAAAATGGTAGCGATTTGCCGCAAAAGACCATGGGAGAGATATTATCATCCCTTCTTTTGCTATGAGGTTTCCTGTGCAGATTGCATGGCAATTACCCAACATTTTTGGATTACCATCCTTATTTGTCTACAACCTCAAAGAGTAATAGTTTTACAGCCACAAATTGTTTGTTATAAAGCTCTACAGTCTATTGTGGTGAATGTTTTTGCTACAAAGCAGAAGTGATGATAGGTGATTCACAAATTATTTCATCATGTTAACTTTTTTATGGTTAGAGGGACAATTGAAGAAGATCTCAGAAATATAGATAAACATTATAGATTTATGCATTGCTTCAATATCCCCATTCAAATTGAGAGGTTTGTAGAAGGTGCAAATCCATGTCCTTGGACAAAACTCTTGCTTGAGACTCGTTTTTGTACATTTGAAGAATCTGATTGAATCAATTGCAAGG

Network for GWHGAAEX001406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	215	504	1.40E-60
PF00271.30	Helicase_C	574	686	1.70E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K14439	SMARCAD1	Signaling pathways regulating pluripotency of stem cells	map04550

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.560
SRP064423	SRR2545915	Juvenile tuber	5.840
SRP108465	SRR5643513	five period of Gastrodia elata	6.970
	SRR5643514	five period of Gastrodia elata	7.590
	SRR5643515	five period of Gastrodia elata	7.340
	SRR5643524	five period of Gastrodia elata	6.920
	SRR5643525	five period of Gastrodia elata	6.150
	SRR5643528	five period of Gastrodia elata	5.290
	SRR5643658	five period of Gastrodia elata	5.030
	SRR5643659	five period of Gastrodia elata	7.300
	SRR5643660	five period of Gastrodia elata	7.200
	SRR5643661	five period of Gastrodia elata	6.720
	SRR5643662	five period of Gastrodia elata	7.060
	SRR5643663	five period of Gastrodia elata	7.210
	SRR5643664	five period of Gastrodia elata	8.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.410
SRP279888	Gastro	Gastrodia elata tuber	9.25
	Juven	Juvenile tuber	14.19
	Mother_Gastro	Mother tuber of Gastrodia elata	5.77
	Mother_Juven	Mother tuber of Juvenile	10.19