Detail information of GWHGAAEX001409/evm.TU.scaffold_109.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226228319|ref|YP_002762425.1| | 1.00E-16 | putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27] |
| KOG | KOG1027 | 0 | Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway |
| nr | gi|743775922|ref|XP_010918355.1| | 0 | PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b-like [Elaeis guineensis] |
| Swissprot | tr|Q9C5S2|IRE1A_ARATH | 0 | Endoribonuclease (Precursor) |
| trEMBL | tr|M0SIT8|M0SIT8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29220_001} |
| TAIR | AT5G24360 | 0 | inositol requiring 1-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 1591222 | 1621375 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001409
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 534 | 822 | 4.50E-39 |
| PF06479.11 | Ribonuc_2-5A | 828 | 954 | 1.90E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | IRE1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08852 | ERN1 | Protein processing in endoplasmic reticulum | map04141 |
| Autophagy - animal | map04140 | ||
| Apoptosis | map04210 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004540 | Molecular Function | ribonuclease activity |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 77.940 |
| SRR2545915 | Juvenile tuber | 58.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.650 |
| SRR5643514 | five period of Gastrodia elata | 26.050 | |
| SRR5643515 | five period of Gastrodia elata | 21.430 | |
| SRR5643524 | five period of Gastrodia elata | 26.850 | |
| SRR5643525 | five period of Gastrodia elata | 33.160 | |
| SRR5643528 | five period of Gastrodia elata | 30.060 | |
| SRR5643658 | five period of Gastrodia elata | 41.150 | |
| SRR5643659 | five period of Gastrodia elata | 15.800 | |
| SRR5643660 | five period of Gastrodia elata | 18.160 | |
| SRR5643661 | five period of Gastrodia elata | 17.230 | |
| SRR5643662 | five period of Gastrodia elata | 21.220 | |
| SRR5643663 | five period of Gastrodia elata | 16.930 | |
| SRR5643664 | five period of Gastrodia elata | 16.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 53.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.64 |
| Juven | Juvenile tuber | 34.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.67 | |
| Mother_Juven | Mother tuber of Juvenile | 28.65 |