Detail information of GWHGAAEX001411/evm.TU.scaffold_109.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407452652|ref|YP_006724377.1| | 0 | Asparagine synthase (glutamine-hydrolyzing) [Riemerella anatipestifer RA-CH-1] |
| KOG | KOG0571 | 0 | Asparagine synthase (glutamine-hydrolyzing) |
| nr | gi|672184321|ref|XP_008812468.1| | 0 | PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 2 [Phoenix dactylifera] |
| Swissprot | tr|Q43011|ASNS2_ORYSJ | 0 | Asparagine synthetase [glutamine-hydrolyzing] 2 |
| trEMBL | tr|A0A068TYV2|A0A068TYV2_COFCA | 0 | Asparagine synthetase {ECO:0000256|PIRNR:PIRNR001589} |
| TAIR | AT5G65010 | 0 | asparagine synthetase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 1673779 | 1736531 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001411
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13537.5 | GATase_7 | 48 | 165 | 9.80E-44 |
| PF00733.20 | Asn_synthase | 210 | 360 | 6.50E-58 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01953 | asnB, ASNS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Pyrimidine metabolism | map00240 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006529 | Biological Process | asparagine biosynthetic process |
| GO:0004066 | Molecular Function | asparagine synthase (glutamine-hydrolyzing) activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.150 |
| SRR2545915 | Juvenile tuber | 81.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.410 |
| SRR5643514 | five period of Gastrodia elata | 38.770 | |
| SRR5643515 | five period of Gastrodia elata | 45.960 | |
| SRR5643524 | five period of Gastrodia elata | 50.460 | |
| SRR5643525 | five period of Gastrodia elata | 17.370 | |
| SRR5643528 | five period of Gastrodia elata | 13.540 | |
| SRR5643658 | five period of Gastrodia elata | 11.910 | |
| SRR5643659 | five period of Gastrodia elata | 90.910 | |
| SRR5643660 | five period of Gastrodia elata | 95.530 | |
| SRR5643661 | five period of Gastrodia elata | 103.130 | |
| SRR5643662 | five period of Gastrodia elata | 93.180 | |
| SRR5643663 | five period of Gastrodia elata | 80.590 | |
| SRR5643664 | five period of Gastrodia elata | 88.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 94.73 |
| Juven | Juvenile tuber | 84.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.24 | |
| Mother_Juven | Mother tuber of Juvenile | 52.43 |