Gene detail

Detail information of GWHGAAEX001414/evm.TU.scaffold_109.60

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2590	1.00E-28	RNA-binding protein LARP/SRO9 and related La domain proteins
nr	gi\|743779269\|ref\|XP_010920098.1\|	3.84E-91	PREDICTED: la-related protein 1C [Elaeis guineensis]
Swissprot	tr\|Q94K80\|LRP1C_ARATH	2.00E-38	La-related protein 1C
trEMBL	tr\|A0A067JVE8\|A0A067JVE8_JATCU	7.00E-76	Uncharacterized protein {ECO:0000313\|EMBL:KDP23970.1}
TAIR	AT5G66100	1.00E-28	winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	1838493	1864220	-

Transcript Sequence
>GWHTAAEX001414 TCCGATCCTGCTTTTGGAAGAAAAATATATTAACCGTCGCATACCCGACAGCCGCCGCCGTAGCTTAACCTAATCGCGTGTTCTCCTCTCCTCTTCCTCGTTGCTGCAGCCTCTCTTGATCGGAACCCTAATCACCGGCGATGACATCCGCCGCGGATCCTCCTCCTTCTCCGCGCTCCGGCAAGGCGATCGCTAACGTTTCGTCTTCTTGGTCGCGCGTTGCAGGGTCTCCTTCGGCCTTAAATACCGACCCTCCGTCTCCGGAGCTGCAGGGAATGTCGCCGCGGAAGGCGTCTGTCGGCCCTGCCCCTGCGGGTCTAGATCACGGTGCCGCCGGCAATGTGGCTGATGCGGTCTCAATTTCAACGAGGAAGAAGTCCGCCTGGAATTTTCCTTCAAACGGTGCGAGCGGTGCGGGATCCATCATTGACACTGTTTCGTGGCCCGCGCTTTCGGAATCCGCCAAGTTTTCTTCCAAGTCTACCCCTTCCGATTTTCCCAAACCCCTCTCCGAGGTGTCGGTCTCCGCTCCGCCGGGATCTTCGACTTCTTCTTCCTCCTCGAAGCAAGCCCCGGGTAATCAGAACACTTGTTTGACTCAGAATCTTGCGTCTCCGGCACGTCAAAAATCAATGAAGCGCGGTGCTGTTCCCGGCGGCAGCAGTAACAACACTGGATCTTCAAATGGCGGAATTACTACGCCACATTCCTTGCAAGTCTCAGAAGCAAACCAGTCTGTGCCAGGCCAACTAATTCTTTCAGGTTCTTTTGCTAAGGGTCTGCAAAACAAGTATAGCAATGGCAATAATGAAAAGGATCATAGCTCCAAGGCTGGTGGATTTTCTTCTCAATCTTTTGGCCATTTTGGCGGTGGCAGAAGGGGCAGCACTGCTCACCATAACAATTATGGCAACAAGCGGGATTTTGAACGCGGAGGCTATGAGTGGAGTCATCAGAATTTTGGTAGAGACGTCAACATGCAGCAGCCTTATCACCAACGAGGTGTTCGTCCATTCCAAAGGCCTCCCATGGTGGTAGCAGCACCATTTATTGCTCCTCCTCTTCCACCTCTTAGGTCTTTTTCCAATCATATTGGTTTTTCGGATTTTGCAGCTCCGGTTTACTATGTTGCTGCCCCTCCACCTCCAGATTCTCTTAGAGGCATTCCATTTGTTCCTCAACCAGCCCCAACTCCAGCACAAGTGTTGTTTTTTCCTGCACCAGATCCTCAACGTGCATTGTTGGTAAAACAAATAGATTATTATTTTAGCCCAGAAAATTTGTGTAAAGACCCGTACCTGCGGAAGAATATGGACGAAAATGGTTGGGTTCCTATATCCTTGATAGCTGGATTCAACCGCGTCAAACAATTGACCAACAGCATACAGTATATATTAGACACAATACAGCTATCGACTGTGGTGGAAGTGCAGGGTGAGAAGATAAGGAAGCGTAATGACTGGATGACGTGGCTGCTGCACCGGGCCGATCGTTTCGGCTCAGCTCCAGGCCGGAAATCCCCTATGGCAGCAGCCAACTACGAAAATCTCGAAGGCCAGTTTCAAAAAGCCTGTTTGGAGGATTCCTCCGGCAGTGCTGTTTTGGGAGGATCTGCAGCTCCCTCTGCCAATCAAATAGTCCCATGCCAGTAATAAGAACAAAACAGCCGCTAGAGGGATGTTGGAGGTAGCCTCTCTGACGTGGCTGCTACTCCTAATACCGAAATCTTTTTTTTATTTTTTATTTTTTTATTTAGATGATTCTGTAGGTTTCTTGAATGGGATCGGGGATACAAAAAAAAACTAAAAATTAAAAAAAAGGTAAAAAATAAACTAAGTATTGGAAATAGTAGGGAAGAACTTGTATACAGAGTGGTTCTGGGCTCATGCATAATGAGCATGCGATGATGGATGGTGATGGGAAAATGCATCTTTTTCTATCTATGAGAGTTTTTTTGCAGGTAGAAATCCATAAGCTGAGCATACTCTAATTTTGAATGGTGATGAAGGGGTTATTTGGGTCTGGCAACCTTCTGCACTTTTGATCGAGGGCTGACTATCTTTTAGTTTCCTTTCTTATTATGTTTTGGACAATCTGAACTAATGCTATAAACCATGGTTTGTAATGACACAAATTTCTAATTTTGGATTGAATACAGTAGTAACTATAATATCTTATTACTTGCATCTGTTACTGTTTATTCTCATGTGCTAACAAACTTGTTTTAGTGTGCTGTATTTATGTTTTTA

Network for GWHGAAEX001414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05383.16	La	368	423	1.60E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.560
SRP064423	SRR2545915	Juvenile tuber	47.080
SRP108465	SRR5643513	five period of Gastrodia elata	32.540
	SRR5643514	five period of Gastrodia elata	32.830
	SRR5643515	five period of Gastrodia elata	31.440
	SRR5643524	five period of Gastrodia elata	32.730
	SRR5643525	five period of Gastrodia elata	62.590
	SRR5643528	five period of Gastrodia elata	47.650
	SRR5643658	five period of Gastrodia elata	47.460
	SRR5643659	five period of Gastrodia elata	40.980
	SRR5643660	five period of Gastrodia elata	52.340
	SRR5643661	five period of Gastrodia elata	46.100
	SRR5643662	five period of Gastrodia elata	47.870
	SRR5643663	five period of Gastrodia elata	53.980
	SRR5643664	five period of Gastrodia elata	51.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.650
SRP279888	Gastro	Gastrodia elata tuber	55.82
	Juven	Juvenile tuber	34.57
	Mother_Gastro	Mother tuber of Gastrodia elata	23.43
	Mother_Juven	Mother tuber of Juvenile	35.36