Gene detail

Detail information of GWHGAAEX001415/evm.TU.scaffold_109.61

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|23098764\|ref\|NP_692230.1\|	3.00E-48	ABC transporter [Oceanobacillus iheyensis HTE831]
KOG	KOG1235	4.00E-159	Predicted unusual protein kinase
nr	gi\|743839466\|ref\|XP_010937009.1\|	0	PREDICTED: uncharacterized aarF domain-containing protein kinase 1 [Elaeis guineensis]
Swissprot	tr\|O04212\|Y2090_ARATH	1.00E-71	Putative ABC1 protein At2g40090 (Precursor)
trEMBL	tr\|M0RZA3\|M0RZA3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P12450_001}
TAIR	AT1G65950	4.00E-159	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	1877751	1947351	+

Transcript Sequence
>GWHTAAEX001415 ATGGGAGGATTCCTTAGGCTTTTCAAAGTGCCCGCCAAGCCGAGGCTCCCTTTCCGTCTGGCTGCGGGGGCAACCTTCGTTGCTTTCGTCTGGCACACAAACCCTAGCATTCTAAGCAGCGAGACAGCGCTCTCCTCGTCTGGTGAGAGGATTCTTAGTGTTTTCGATGGCGCTGCCCGAACTTTGCGCGCTTTCTACGCCATAAGCTCCATTGTGCTCGATTACAAGTATTCTTTACGGGGGCTGTCTTCTAACTCAAGTGATTACAGATCTAAGTTACCCGAGATTCATCTCCGTGCGGCTAAAAGGCTACTGAAACTTTGTCAAGCTAATGGAGGATTTTATGTTAAAGCTGGCCAATTCGTTTCGTCATTGAAACACGTTCCAAAGGAATACTGTTTAACACTGTCATCATTACAAGACCAGGTAAACCCATGCAACATTAAGGACATAAAAAAAGCAATTTTCCACTGTTTTGGCGATGATTGCTCAAATTTATTTCAATCAATTGATGAAAAGCCAATTGCTGCTGCATCAATTGCTCAAGTACACCGTGGAACTTTGAGGAATAATCATGAAGTTGCAATTAAGGTACAATATCCTGATTTGGAGCAGCGGATGAAGATTGATTTTACTATTATGGATATTCTTTCTAAATCGATTTCTATGGTTTTTCCTGGATACAAGTTTGATCAAATGTTATCAGAATTTAAGAGAACAATGTCTCTGGAACTTGATTTCATTCAAGAAGGAAAGAATTCTGAGAGGGCTGCCAGAAATTTAAAAAATAATAAGTTTGTTAAGATCCCTCGTGTTTATTGGGATCTAACAAGAAGTCAGGTTTTGACAATGGAATTTTGCAGTGGTCACAAGGTTAATGACTTGGAGTTTTTGATGGATTCAGGTGTAAATACCATAAAGGTTGCCGAAGCATTAATAGAAGCATTTGCTGAAATGATATTTGTTCATGGCTTTGTGCATGGAGATCCTCACCCAGGCAACATTTTAGTTTCTGTTGAACGAAATAAATGTTTCTCACTTGTCCTTTTAGATCATGGAATCTATAGAGAGCTAAGTGAGAAGTTCAGGCTGGACTACTGCAAATTATGGAAAGCTTTAATCTTTCTGGATTCACAGAATATTGCTAATGTTAGTGAACGATTTGGCGTTGGATATTACTCAAAATACTTCCCTGTTATTTTCACCGGAAGAACTTTAGAAAGCAAAGCTGCTCTGGGAGCACAAATGAGCGAGGAAGAGAAGAAACGCTTGAAGCAAGAGCTGCAGTCCCTAAGGATAGAAGATCTCTCGTTGTTCATGGAATCTTTGCCTCCTGAATTCCTGTCCATACTCCGAACAGATAGTCTGCTGAGTTCCATATCGAGCAGGCTCGGAGCCCCACGCCTCACTCGCCTTCTTGCTTACGCACGATATGCAGTCTACGGCGCTTATGCCAACTCTGATAAATGCGGATTCTCAAAATTCAGAGCTGATGTGAGTTATCTTCAGCTGCGTGCATATATCGAATTTTTGGCGTTTCTTTTGAAATTTGAAGGTTTCAGGCATTCGCTGGCAATCAAGATTAGGAGAGTGCTGTGCAAAGTCGCTGAAGCGTTTATGGGGTGGAATATTTGTGAATAAAGAACTAGCTCTTACACTCGAGAAGTGCACAAAAGAGAGAGTTTGTGTTTGGATAATTTTTTTATGTCGTTTTGATTCATTATTTCATCATGATTTAGTCAATTCTGAATATTTGTATGAAAAGCTAGAAGCGCACAAAAGAGATCTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX001415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03109.15	ABC1	159	273	5.40E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.150
SRP064423	SRR2545915	Juvenile tuber	7.870
SRP108465	SRR5643513	five period of Gastrodia elata	2.830
	SRR5643514	five period of Gastrodia elata	4.760
	SRR5643515	five period of Gastrodia elata	3.300
	SRR5643524	five period of Gastrodia elata	3.890
	SRR5643525	five period of Gastrodia elata	4.130
	SRR5643528	five period of Gastrodia elata	3.530
	SRR5643658	five period of Gastrodia elata	5.240
	SRR5643659	five period of Gastrodia elata	4.240
	SRR5643660	five period of Gastrodia elata	5.440
	SRR5643661	five period of Gastrodia elata	4.980
	SRR5643662	five period of Gastrodia elata	4.600
	SRR5643663	five period of Gastrodia elata	4.620
	SRR5643664	five period of Gastrodia elata	5.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.910
SRP279888	Gastro	Gastrodia elata tuber	6.92
	Juven	Juvenile tuber	3.86
	Mother_Gastro	Mother tuber of Gastrodia elata	1.96
	Mother_Juven	Mother tuber of Juvenile	2.43