Gene detail

Detail information of GWHGAAEX001425/evm.TU.scaffold_109.72

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0978	E3 ubiquitin ligase involved in syntaxin degradation
nr	gi\|672110898\|ref\|XP_008797856.1\|	PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 [Phoenix dactylifera]
Swissprot	tr\|Q336R3\|BRE1B_ORYSJ	E3 ubiquitin-protein ligase BRE1-like 2
trEMBL	tr\|M0T4M9\|M0T4M9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P06310_001}
TAIR	AT1G55250	histone mono-ubiquitination 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	2252784	2276984	+

Transcript Sequence
>GWHTAAEX001425 ATGCAGCTCTCCACTGAAGTCGATGCTGCAGCTCTCCAATATCAAAACCAGCAGCTTGTTCAACAGTTAGAGGCTCATAAGAAGGCAATGCATGAGTTGGAAAATAAGTATAAGAAGTTGCAAAAGAAGAAGATCTCTTATGACCAAACTTTGATAACTATAAACAAAATATGGAATCAGCTAGTTGATGACTTGGTTTTACTTGGAGTTCGTGCTGGCTGCGACCCAAAAAATGTGCATAAATTAGACCATGAAGATTTTGTGGAAGACATCATTGCATCTTACCCTCCAGAAGAGACTTTTCTGCGTAGACTCTTAAGAGCATCTGCCGCTCAAAGTAATTGGGTTGAGTTAAGTATCAAAAATGTGCAAGATGCTCTTGTGTCACGCCATTCAAGGACGATGGATTTGATGAAAAACCTCGAGGAGATGATAGTTTCTCGACAAGTTAAATCTGAGAGGTTAGCAGTAATTTTACATGGCACTCAGTCTTCAGAAGAGACCATTGGACAACTCAAGGAAGTTGATTCTTCATTAAGAGAGGAGCTTAGTAAACTTCAGGCAGCCATTGCGATTCTGCACCAAAAGCATAAAAAATATGCTGAAGAAACAAATGCTTACCTTGAGTGCAAGTCAAATGGGAATTCAGAGATAGAACGCCTTTCAACTGAGTTAGAGGAAACTATGGCTGAACTTGAGGAAAGTCGACGCAAGCTAGTTATTTTACAGCTGCAGAAGAAAGGTGCATCTGCTATGACTTGTACGCTTGTAAATTCAATAAATGGGAATGGTACACCTGGGAGACTTGTAGATATGACTCCAAGGCAGTTGAAAGATTCTATTGAAGAAGCCAAGGTGTTGGCATCAAATCGTGATTTTGAACTTCAGGAGGCACGAGAAGACAATTTAACCTTGTCACAGCAATTGGATGGCCTTGAGAATCAACTGAAGGATGACAAATATGTGCTCCATTCAAAACCATATAATTTGTTGAAAGATCAACTACAGCATTTAAATGTTGAACTTGAGCGGTACAAGACTTTAATCGAACCTTTACTGGCCGATAGAAATCAACTACTTAAAAAAGATAAGGAGCTGTCTGCGAAAGCAGATTCCCTTGATGTTTTGAAGGCCTCTGTATCAAGCTATGAGTCCAAAATAGAAGAACTAGAGCTTCAAATTCAGAAGCATATTACTGAAAGAAACAAACTCGAAATAAAATTAGAAGACACCCTACAGGATTCAGAGAGAAAGGACATCAAGGATGAGATTCATGTCATGGCATCTGCATTGTCTAAAGAGATGCAAATGATGGGAGCTCAGTTGAATCGGGCTAACGATGCTGCATCTGAAGCCATTTCATTACGGCCCCATGTGAATTCTCTGACAGCTGAACTAGAAGTCAAGATTGCTGAACGCAAAAAATTATCAGATAAATGTGCTGAGCAAACTGTTGAGATTAAGTCACTGAAAGAGCTGACTGAGAAATTGGAAAAGGAGAAACAAGAGCTGCAGATCTTTGTGGATATGTATGGACAGGAGTCTTATGACAATAGAACTATTATGGAGATAAAGGAGTCAGAACAGAGAGCGCAATTGCAAGCTGAAATATTGAAAAATGCTTTTGAAGAACACAATCTTGAACTGAGAGTTAAGGCTGCAAATGAGGCTGAGACCGCTTGCCAGAAAAGGCTTTCTACTGCTGAAGCAGAAATAGCTGAAATATGGGGAAAACTGGATGCTTCTGAAAGAGATCTTATGGAACTTACAGAGGCTATAAAAATCAAGGATGCGGAAGCTGAGACTTATATTTCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAACATCAGCATTTGCTTCAATTGGTTGCAGACAGGGATGAGTACAATATTAAGCTTGTATCTGACAGCGTGAAGATGAAACAAACATACAGCTCGCTTCTGTCTGAAAAGCAAGCCAAGCAAAATCAGCTTCAACAGGTTAATTTATCATTGGAGTCCGTGAAGACCAAATTAGCTCGTGGCGAAGAGCAGATGAAGGCATACTTTGTACAAGCTGCAAAAGCATCTGTAGAGAGCCGACGCACCGTCATCAGCAGTGACAAAACAAAACTGGAGCTTGCTGATTCTGAGAAAGAACTGAAGTGGCTGAAATCTGCCGTTGATCTCGCGGAGAAGGATTACGAATGCAATAAGGAGAGGGTAAGAGACCTGAGGGTGGAGTTGGAGAGGGAGAGGAACGAGAGGAAGAAGCTGGAGGAGGAATACAATGAGCTGGAGAAGGAAGTCATGGAGCTGAGCCCCGAAAGGCAGGAGATGGCTATCCAGAAGCTTCAGGAGGAGATCAAGGAGTGCAAAGCGATACTGAAATGCGGCGTTTGTTTTGATCGGCCGAAGGAGGTGGTGATCACTAAATGCTTCCATCTGTTCTGCAATCCATGCATCCAAAGGAATCTGGAAATCCGGCATAGGAAGTGCCCTGGCTGCGGAATGCCGTTTGGGCAGAATGATATTCGTGAGGTCAACATTTGA

Network for GWHGAAEX001425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	794	837	2.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	70.670
SRP064423	SRR2545915	Juvenile tuber	45.920
SRP108465	SRR5643513	five period of Gastrodia elata	17.500
	SRR5643514	five period of Gastrodia elata	15.490
	SRR5643515	five period of Gastrodia elata	13.960
	SRR5643524	five period of Gastrodia elata	14.650
	SRR5643525	five period of Gastrodia elata	23.580
	SRR5643528	five period of Gastrodia elata	22.470
	SRR5643658	five period of Gastrodia elata	29.570
	SRR5643659	five period of Gastrodia elata	30.380
	SRR5643660	five period of Gastrodia elata	33.400
	SRR5643661	five period of Gastrodia elata	24.670
	SRR5643662	five period of Gastrodia elata	32.280
	SRR5643663	five period of Gastrodia elata	35.540
	SRR5643664	five period of Gastrodia elata	40.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.910
SRP279888	Gastro	Gastrodia elata tuber	34.91
	Juven	Juvenile tuber	34.14
	Mother_Gastro	Mother tuber of Gastrodia elata	26.67
	Mother_Juven	Mother tuber of Juvenile	29.77