Gene detail

Detail information of GWHGAAEX001429/evm.TU.scaffold_109.81

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0314	5.00E-27	Predicted E3 ubiquitin ligase
nr	gi\|672110826\|ref\|XP_008797512.1\|	9.23E-136	PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Phoenix dactylifera]
trEMBL	tr\|A0A061GKT0\|A0A061GKT0_THECC	2.00E-112	Uncharacterized protein isoform 2 {ECO:0000313\|EMBL:EOY30023.1}
TAIR	7291741_1	5.00E-27	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	2726486	2809144	-

Transcript Sequence
>GWHTAAEX001429 ATTTCCCCGAGCGTCTGCTTAGCTCTTTTTCAGGTCTGGTGTTTCTGGATCATGGCGGTACGCTTCAAGTTCCGCAGCTCTGTTAACTTTGATTCGGTTGACCTAGGCGACCGCTCCTCAATCTCTGTTCACGATCTCCGAGAGAGGATCGCTGAACTCAAGAAACTCAAAGTCTGTGCCGACTTTCGACTCGTTCTCTCCGATGCCGACAATGGCCAAGCTTTTGAGGACGAGGACTTCCAAATTCCTGCGGGTTCTAGCGTCATCATTAAGCGAGTGCCAACTGAAAGAGAAGCGACTAATGATCGGGGTGTGATTTCTTGTGCTGCTGGAAAAGCTAAAGGATCTGTTGGCAGACCACCATTCTCTGCTTCTACTTCTGAGAATTTTGGCATTAACAACTTCGATGACTTTGGTGTTGACTTGTATCCCAATCTAGACGCTCAAATTCATTGTTATGCTGATGATATGAACTTTCCTACTTCAACTGCTAATATGCCGAAGGGTGTTTCCATCAGATTCTTAGAAGCTCCCAACCATAAAGATAAAAAGATTGAAAAAAGCAATGCTAGTGAATCCTTGTCTAACAAAGTTACTGGAGAAAATATTAAAGGGGGATCTGATGAAGTAGGGAGCCAAAAGGAAATGACCTTCAGGAACAATGCTGACCAGAAGATGAAACTTTTGGAGGATTTGCACATCCAGTTGATGCATAATGCAGATTTGCCTGCAGAGCTTAGGTGTTCCCTTTGCAATTCTATATTTAAAGAGGCCGTAATGATACCTTGTTGCCAGCATAGTTTTTGTAACAGCTGTATTGCTTTGACATTAGTCAAACAATCCAGTTGCCCCAAGTGTTCTTCAACAAAATGCACTGTCAAGGATTTGCTGCCAAACTTATCTCTTCGCCAGGCAATTGAACATTTCCTTGAGGCACAGAACACTATTAATAATACTTCACACAACAATCTTCCAATGGATGCCCCGGATGGAGAATCAGGAATTCAAGCAAAAGAAATATCTTGTGCCGTCTCTATAAGACAACAAGAACCAGCATGTTCACCTTCTTCTGCAACAGGGATGGGTTCCAACCATGTAATTTCTGAAACTGCATGTGAAAGTAATTTTCCTTTCAAAAGGAAGGAGGTGCTAAGCATTGAAGCTCGAGGCGGGGGTGTTGCGATCCCTCCAGGCATACATAGGAAGTATGTGCGAAACTGTTACATGTGTGGTTCCCCAGATCACTTGATTAGAGAGTGCCCTCAAGCCAAAACAGGAAATGCTGTGGCCGCTGGTGGCTTGCGGCCCTACCGTGATAGCTATTGGCATGGGGCCTCTTTTCCAAATATTAGGCCTTATGCAAATATATATGGTACCACTACTATGATGCCTTATGATCCAATGATGTTTCAGGTGCCAACTTTTGGCATTTCATCATGCATGCCACCAATGTATAATCCCTTGTCAACACCCTACGGATTCATGGGTATGGGAGCTTTCCCGCGGGCCATGATGCCAGGAGCAGAGCCTGGAACCCGTTCTTCTGAAACTTTGAACAAACAAAATTGTGAAAGGAACCTCAAGTATGAACATCAAGAGAGATATCATGGGTCTGATTTATCTGAAGATTACCACTCTGGTGGAACTGGAAAATCACATGCAAAGACCATTCAGTCAGATAAATGGCCTGTCGCTGACAATGAGGGACATAAGGCGCATGGAAAACTTTCACATCACGAGCATATTAGTCCTCGCCAATGGCACAACTTTCAAGCAGAAACATTTCATACGGTTGATGACAAACACAAAGATCCACATATTTTGGCTGACGGAAGAGACCATAGAACTCATTGTTCTGAGAAATCAAAATCTGATTTGCAAGATTTATCTAATGACTCCAGAAGGCGTAGCGGAGATAGGGAAAGTCACCAGGATAAATTTTCTAAGTACAGTGCCAGCGACTGTAGCTGGAAAAGTCATCACAGAAGCCGGATATCTGAAGATGATGAATTTCCAAGCCATCGTAAAAGTCATTGCTATAAGGAGAATAGTCAATCTGAATCATGTTTGGAACATGAGTCTTCATCTATTGACCGTCGAAAGTTTCACAGAGAAAGAGACTCTAGCCATAGTTCCAGGCACTCTAGTAAAACAGCCAAAGTTGGAGACGAGCGGCTTGATAGAGACATGCGAGAAGGCTGCGAAAAGAGGGGGAGAGATCAGGGCCACCAAAAATGTAGGAGAACCCACTGAAATATTTCGATATTTGTTGGTTTTTTCTTAAAGTAGAGGATGGTAATAATCGAGTTGGAGCTATGAAATGCTGAAGCCACTTAAAATATATCATCAAAGATGCTGATTTTATGATGCATATAAACAACTTTGGAGCTAACCTTATGCTTAGAGTTATACTGTCTTCCCTTGATTATTTTGAAGTCTTTGGAGTTCATTGCCGTGCATTATGTGCAACACAGAAGATGTTGTCAATAATATGAAGATGATGAATTTCCAACCTTATGCTTAGAGTTATACACGCAAGGTGGAAGTATCCATGGTAGCAGCTTAGGTATGACTTCTTAATGTTGTAGCAACTTTATATTTCTGATAAATTTGTTCTTTTACAATCTTATTTTCTGTTAATGCTAGCTTGAATAGTATTTGGAATTCATAAATGGTCTTATTTTTTGGCATCAATAGGTTTATCCTTCTTGATGTTAAGAGTTTCTATAGCTATTTACTGTGGGTTAGCTAGAAAAGTTTTTAACGTACCCAACTACTTGTATTGTTATCATATGTACGCAAGGAGTACTGATATTGGGCGTATAAGTACTCTTAATTTTGTTGGGGCTTTGCTTGAAAGACTTGGTTAGGCATTTTATGTAGGTGTAGTTTTGCTTATGGTGGATTCTTCGTTTTTTCACAATAATGAATTAGTAACTATAATTGTTGGCCATGTCATTCTCGAAATAATTTGCTTAAATTTTTATTATCTCTTGATATGTGTACATGTATATCTATGTGTATGTAGGCTACTATTTTTCAGGTGGAAAAACTTTTTCTCCTTACCTATCTTGCAACATACATTTATGTGGATGGATGGATGAGATCT

Network for GWHGAAEX001429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08783.10	DWNN	3	77	4.80E-17
PF13923.5	zf-C3HC4_2	230	269	5.20E-07
PF00098.22	zf-CCHC	389	405	0.00039

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.140
SRP064423	SRR2545915	Juvenile tuber	18.660
SRP108465	SRR5643513	five period of Gastrodia elata	11.840
	SRR5643514	five period of Gastrodia elata	11.600
	SRR5643515	five period of Gastrodia elata	12.220
	SRR5643524	five period of Gastrodia elata	12.310
	SRR5643525	five period of Gastrodia elata	8.570
	SRR5643528	five period of Gastrodia elata	8.430
	SRR5643658	five period of Gastrodia elata	8.330
	SRR5643659	five period of Gastrodia elata	13.240
	SRR5643660	five period of Gastrodia elata	14.390
	SRR5643661	five period of Gastrodia elata	14.800
	SRR5643662	five period of Gastrodia elata	14.270
	SRR5643663	five period of Gastrodia elata	14.150
	SRR5643664	five period of Gastrodia elata	13.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.480
SRP279888	Gastro	Gastrodia elata tuber	24.80
	Juven	Juvenile tuber	30.25
	Mother_Gastro	Mother tuber of Gastrodia elata	17.42
	Mother_Juven	Mother tuber of Juvenile	27.54