Detail information of GWHGAAEX001431/evm.TU.scaffold_109.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26130NMD protein affecting ribosome stability and mRNA decay
nrgi|672144777|ref|XP_008796291.1|0PREDICTED: 60S ribosomal export protein NMD3 [Phoenix dactylifera]
trEMBLtr|B9H0C6|B9H0C6_POPTR0Nonsense-mediated mRNA decay NMD3 family protein {ECO:0000313|EMBL:EEE86546.2}
TAIRAT2G038200nonsense-mediated mRNA decay NMD3 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011429087562910768-
Transcript Sequence

Network for GWHGAAEX001431

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04981.12NMD3252552.10E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07562NMD3 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.940
SRR2545915Juvenile tuber31.540
SRP108465SRR5643513five period of Gastrodia elata31.950
SRR5643514five period of Gastrodia elata25.790
SRR5643515five period of Gastrodia elata30.190
SRR5643524five period of Gastrodia elata25.560
SRR5643525five period of Gastrodia elata31.670
SRR5643528five period of Gastrodia elata28.080
SRR5643658five period of Gastrodia elata29.150
SRR5643659five period of Gastrodia elata51.200
SRR5643660five period of Gastrodia elata54.670
SRR5643661five period of Gastrodia elata52.520
SRR5643662five period of Gastrodia elata52.850
SRR5643663five period of Gastrodia elata52.450
SRR5643664five period of Gastrodia elata52.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.990
SRR6049655Rhizomagastrodiae_C368-T10_good_156.750
SRR6049656Rhizomagastrodiae_C368-T07_good_143.550
SRR6049657Rhizomagastrodiae_C368-T07_good_148.220
SRR6049658Rhizomagastrodiae_C368-T04_good_139.120
SRR6049659Rhizomagastrodiae_C368-T04_good_141.950
SRR6049660Rhizomagastrodiae_C368-T01_good_144.020
SRR6049661Rhizomagastrodiae_C368-T04_good_142.210
SRR6049662Rhizomagastrodiae_C368-T01_good_135.100
SRR6049663Rhizomagastrodiae_C368-T01_good_136.480
SRR6049664Rhizomagastrodiae_C368-T10_good_139.180
SRR6049665Rhizomagastrodiae_C368-T10_good_139.180
SRP279888GastroGastrodia elata tuber 55.90
JuvenJuvenile tuber59.92
Mother_GastroMother tuber of Gastrodia elata 21.21
Mother_JuvenMother tuber of Juvenile 33.68