Gene detail

Detail information of GWHGAAEX001433/evm.TU.scaffold_109.86

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743823003\|ref\|XP_010932419.1\|	0	PREDICTED: uncharacterized protein LOC105053095 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8RXA7\|SCD1_ARATH	2.00E-10	DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBL	tr\|A0A061GLL0\|A0A061GLL0_THECC	0	DENN domain-containing protein isoform 1 {ECO:0000313\|EMBL:EOY30283.1}
TAIR	AT5G35560	0	DENN (AEX-3) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	2964962	3090569	-

Transcript Sequence
>GWHTAAEX001433 GAATAATTTAAAAAAAACAACGTTGTTCACCGTTCAACGCCCGCTGGGTTTCGAGAAGGCGACGTGAACTTGCACGCGTTCGCAGTGTTGTCCATTTCACGTGTTCGCAGTGTTGTCCATTTCGAGACCTTGCACCGTGAGATCTCCACTCCGCAGCCTCTTTCTCGGTGAGATGAGCACGGAGAAAATTGAAGATTCTGATAGACCTGGACTGGGCGCTTCTTTTTTTCTTCAAACAAATGATGAAGTTATTAATACTGTTGCTTCTTCTGCTTCGGCTTCAAATGTTCGTTCCCCACGTCCGTCAATTATATATTCTTCTAAAGATGATAATAATAACAACCAACTTCAGAAACTACAACGTCATGTTGCCAAAGTGTTGAAAGGATTTTCACCCCCTCCGCATGTGAAGAAGAGGTCATATAATCCCGAAATTCTTACCACTCAGAAACGTCAATGGGCGAGATTCCAGTTGCAGTCCTTGGATCAAAAATCTGTCAAAGAACCAACAAAGCTATTTGAGAGCATTGTTGTTGTTGGGTTGCATCCAAATGCTGATCTCAAGGCACTTGAGAAGGTGGCATTGAGAAGAAAAAATACATCAACAAGTCTGCTGAAAGGTGAAGACCAAGTTGATACTGAAATCAATATTGAGCCACAGGTTTTATTTGTATATCCTCCAGACAAACCATTGCCATTGAAGTACAAAGACCTCCTTTCTTTTTGTTTTCCTGGAGGACTAGAGGTTCGTGCTGTTGAGAGATCTCCCTCTTTAAGTGAGCTGAATGAAATTCTTCTTGGGCAGGATCATATAAAGCAAAGTGATTTGTCGTTTGTATTTCGTCTTCAGGTGGCTGATGACTCGAGCTTGTATGGATGCTGTGTTTTAGTTGAAGAGATTGTACAGAAACCTTCAGGATTGATTTCAATTTTATCAGAAGAAAGGCCTTTCCTTTCAACTCTCAGCCGCCACATTATTACGACAGCCAGATGCTATTGTATTTTGTCGAGGTTTCCATTTTTCGATTTGCATTTTGGCATACTAAGAAGCATATTCACTGAAGAAAGGTTACAACAATTAAAAAAAGGGACTGGCATGTTGTGTCTGGAGTCTCCTGATTACTATGAAGACAGAGAAAACCCTGAACATTCTAATGGTAGTGAAGTTTTGTCTGATGAGGATGAAGGTGGCAATGGCGATGTTGAATTTCCTACATCGACTTCTGAAACTGCATCCCCTTTGGAGGAAACAGATAAAGTTAATTCTATGGATAATAATATGGCTGAAGTGCACCCAGAGACTAATGGACCCATAAATATCAATGAAACAACTCAAGCCATTGTAGAACCAAAAAAGGTTATAGCTGAAGATGGGGCAGATTATACTGACCAAGATGGGCATCATTACTTGGCTGATGATGACTTGCCTAAAAAGCAGGCAGAGAAGAATTTTCATGAGACAGTTCTACCTCTTATGCGGCACCTTCGTTATGAAAGCTCTGAATCCTCTTCAAGTTTACAGGGTTCTCCCATTGAAGGAATAAGCTTTAGGACTAGCATGCCAGAAGTCGAACTCGAAGAAGCAACTTCTTCTGGCCATGTAGATTCTAATGATCATGATGGCATACTTGAATGGGCCAAGGCGAATGGACACGGATCCTTACAAATAATTTGTGAATACTATCAGCTACGATACCCAGACAGAGGTTCAACGCTCATTTTTCAACCTCTAGAGCACTTGCATTTATTGAAGTTTCATCGGCCTTGTGAAACTCTTCTTCATATCGCTGGATCAAGCATAGATCTCAGATCTTTCAGTACTACTTTGGAAGTGGCAGAGGCACACAGTGCACTTTTGGCAGAGGAAGAGGCAACTGCTTTATCTGTATGGACTGTTGCATGTATATGTGGAAGCTTGAGGCTTGAAAATGTGTTAACCATGTTTGCTGGGGCACTTTTGGAGAAACAAATTGTGGTTTTATGCTCTACTTTGGGAATATTAACTGCATCAGTATTATCCATAATTCCCTTAATTCGTCCTTATCAGTGGCAGAGTCTACTAATGCCAGTATTACCCAATGATATGTTGGATTTTTTGGATGCACCTGTTCCATATATTGTCGGTGTGAAGGATAAGACTGCTGAGGTTCAATCAAAATTATGCAATGCAATTTTGGTTGATTTAAACAAAAACCAGGTTAAGTCCCCTTTGATGCCCCATCTTCCACAACACAGGGAATTACTTGCATCCTTAAGTCCCTATCATTCAAAACTTGTGGGTGAGAGCTATTTGGCCAGGAAAAGGCCTGTTTTTGAGTGTACAGACGTTCAGATCGAAGCTGCTAAAGGATTTTTGGCAGTTCTAAGGTCTTACCTTGATTCTCTTTGCTCAAACCTACGGTCCCACACTATAACCAATGTCCAATCAAATGATGACAAGGTGTCTTTACTTCTTAAAGAGAGTTTCATTGAGTCATTTTCAAGCCGAGACAGACCTTTTATGAAGTTACTTGTGGATACCCAACTGTTTTCTGTGCATACAGATCTTGTTCTATCCTTCTACCAGAGAGACTAGCATTTTCCTCTCAGTGAAGGAATTATTCTGAATTGTACAGAGTATAATCTTGCAATAAGATTGCCTTGTGTTATAATATATGAAAAGGCTTCCTGTGAAAAGCTTCAAATCAAATACATTGGCAGTTTATACTCTTAAAATATTTTGTACTCATTGATTCTTTCAAGTATGCATAAAGTTGCCAGGGTTTGATGCATTAAAAGTTTCTAGCTGTTTATTTTTTTGCAACTAAATAGTGATTGGCCATCCTATTTTTTCAATAAAGCTATCAATCTGGTGTGGTTGATGGAATTTGAATTCTTGACATGTCGAGTTTAAATCCATTGTAATAATCACTGGACAACAAAAACTTGACCTTTTTTTTGCTGGTTACCTAAATTACACAATGATATGATTTTGGAATTCTTAAATGCCTCTACTTCATTTTCTTAGAGAGGGTGGCTATTCTGTATGTACTTAAGTTTTGGGTGGTATGCATCTATTT

Network for GWHGAAEX001433

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03456.17	uDENN	162	239	1.00E-07
PF02141.20	DENN	559	674	1.80E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.040
SRP064423	SRR2545915	Juvenile tuber	26.770
SRP108465	SRR5643513	five period of Gastrodia elata	16.960
	SRR5643514	five period of Gastrodia elata	17.090
	SRR5643515	five period of Gastrodia elata	16.810
	SRR5643524	five period of Gastrodia elata	16.990
	SRR5643525	five period of Gastrodia elata	13.490
	SRR5643528	five period of Gastrodia elata	12.810
	SRR5643658	five period of Gastrodia elata	16.100
	SRR5643659	five period of Gastrodia elata	11.470
	SRR5643660	five period of Gastrodia elata	11.120
	SRR5643661	five period of Gastrodia elata	13.030
	SRR5643662	five period of Gastrodia elata	13.250
	SRR5643663	five period of Gastrodia elata	13.600
	SRR5643664	five period of Gastrodia elata	11.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.950
SRP279888	Gastro	Gastrodia elata tuber	19.87
	Juven	Juvenile tuber	21.60
	Mother_Gastro	Mother tuber of Gastrodia elata	22.57
	Mother_Juven	Mother tuber of Juvenile	26.48