Gene detail

Detail information of GWHGAAEX001436/evm.TU.scaffold_109.90

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743774941\|ref\|XP_010917842.1\|	PREDICTED: uncharacterized protein LOC105042369 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0SJA1\|M0SJA1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30870_001}
TAIR	AT2G21720	Plant protein of unknown function (DUF639)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	3239948	3244226	+

Transcript Sequence
>GWHTAAEX001436 ATGAAACAATTATCCGCCATTGCTAATGATCTTCTTCAGAGATGTGCAGAAATTCTTAACACTTGTGATGTTGCTCTCATTAAAGAGTTTGACCTAAACTTGAAAAGCTCTGAAGGCAACTACTTTAGGAGATTGGTTGAGTTTAGCAGCTCTAAAGCAATTCAAAATTTTTTTAATGGGGATGGAGAGAAAATCAGTGATGCGAATTTTAGCCGTTTCACTTTTGATATGATGCTTGCATGGGAGATCCCTATCAGCACCGATGAAGATTTCGATTTGAATCGTGTTGAAAAGGAAGGTTTACAAGGAAATGCAAGCCAGATGCATGATGACATTCCCCTCTTCTATTCGGACATAATGCCATTACTTGTGGATGAAGAAAAAAATGTTGGTGAAGATGCTTTTGTATGGTTGGGATCTATTATTCCTTTAGTTGCAGATGTTACCAATGCTCGATTCACATTTGAAAGACTCACTGAATCCACGGCAAGCCGATTGCATTATCCTGCCTATGATAGGTTTCTCAAAGAAATAGACAAATATATAAAGTACCTGCAAAAACAAAGAGTACCAAAAGGGTTTAAATTCTCAGATGATGAATTCATATTGCATGTAGAAGGGAATGGAATGACTCAAAGAGTTGTTCGTCATATCGGTATGACTAGTTGGCCAGGAAGACTTACGTTGACAAACCTAGCACTCTATTTTGAGGCTTCCAAAGCATTTTCGTATGAGAATGCCTTGAGGATCGACCTTTCTAGTGCTAAAGAAGATCATCAATTGAAAGCAACATCTACTGGACCTTTTGGTTCTCCCTTGTTTGATAAAGCCTTAACATACGAGTCTTCACAACTCACAGAATCAATGACACTAGAGTTCCCAGAGATGGGGAGCTCGACCAGACGAGATCATTGGCTTGCACTAATAAAAGAAATCATGCTAATGCATCAGTTCTTATCAAAATTCAAGATTGAATCTATTAATTCAGAAATCTTTTTACAAGCCTGGGAAGTACAAGCAAGGACTATTTTGGGGGTTATGAGGCTTCATGCTGCACGAGAGATGCTTAGAATGGCGCCACCACCTCCCATATACTTCCTAATCTTTGCTTTGTTTGATGAAGTTCCCAAAGGGGATTATGTGTTGGAAGAACTATATACTAGCTTGAGGAAGGAAAAGGAAATAAGCACTTGTAGTGCTTCCTTCATACTCAAGAATCTAAATATGACGCATCCAATTATGCAGGTAATGGATGTTATAGAAGGTGTTGAGATAACACCAACATGCACAATAAATGAAACATCAGAATCACTTGAGACGATTATTGAACAAGCGAGGGAGGAGCATAAAGAAATAAGTAATGTCAATGTTAATATTGAAAGAATTAAAGATGAAGGAATCACTGATAGCATCCTTGTTTTAGCAGAGCTACTGAGCCCTCTTAAGAATCTTCTAATATGGTTCCAAACTATCATAGCATGGGAAAAGCCAGTACTATCCTTATTAGCATTTGTTATCACTCTTATTAGTATATACAAGGAATGGTTTGGTCCGACCCTTGCTGCACTCTTGTTGTTTGTTGTTGGAAAGATGCTTCGGGCGAGATACAAAAAGCTGGGAGAGCTGGACAATGAGATTGTAGTTTCCTCTCCTCCCTCAAATCAAACAACAGTGGAGAGCATAATGTCAGCCTATTACGGAATTAAGAACATTGATGCAATGGTTAAGGCAACAAACATCACCATACTAAAAATCAAATCCATCCTAGTATCAAAGGCATCAAAGCATGCAGATATGACAATGTGTGGGCTGAGTACAATTGCACTTCTACTGATTGTTATCCCCTTCAAGTTTATTCTGATAGGAATGGCTACATATATCATCATGTCTAATCTAAACAACCCAAAGAATATGAAGAGCAATCAAGAAAATAGAAGGCTAAAAGAGTGGTGGGAGATGATACCGATAACTCCAACTCGTATCATCACATGCCCTCCATGAATTTTATTTTACTTTACTTTTACAAGAAAATCTCCTTCTGAAGGAAAAAACCCACCTCCCTAGTTATGAAATTATTTTGAAACTAGAACTATAGTTCATTTTGTGATCCCTGCTTAGTTAGATCTACAAGCATAGTAGAACTTTGTATACCTTTTTAGTTTGCAAGTTTGATGCATATGGTAGG

Network for GWHGAAEX001436

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04842.11	DUF639	437	662	1.60E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.490
SRP064423	SRR2545915	Juvenile tuber	0.310
SRP108465	SRR5643513	five period of Gastrodia elata	0.250
	SRR5643514	five period of Gastrodia elata	0.370
	SRR5643515	five period of Gastrodia elata	0.100
	SRR5643524	five period of Gastrodia elata	0.270
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.050
	SRR5643659	five period of Gastrodia elata	0.180
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.050
	SRR5643664	five period of Gastrodia elata	0.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.140
SRP279888	Gastro	Gastrodia elata tuber	0.42
	Juven	Juvenile tuber	0.09
	Mother_Gastro	Mother tuber of Gastrodia elata	0.13
	Mother_Juven	Mother tuber of Juvenile	0.03