Gene detail

Detail information of GWHGAAEX001437/evm.TU.scaffold_109.91

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	6.00E-135	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672131432\|ref\|XP_008789277.1\|	3.90E-156	PREDICTED: E3 ubiquitin protein ligase RIE1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8GUU2\|RIE1_ARATH	9.00E-128	E3 ubiquitin protein ligase RIE1
trEMBL	tr\|M0TE34\|M0TE34_MUSAM	7.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P02440_001}
TAIR	AT1G68070	6.00E-135	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	3249691	3262471	-

Transcript Sequence
>GWHTAAEX001437 TATGCCTACATATTTTTATGCAGTGATTCGTATGATCTATGCATCTCCGCAATATGCGCGATTTGAATAGAAGGCTACATCCAACCAAAGAGCTGTTTTTGAACGATCATGCATCTCGACTGACCTAGTAGAAGGCGAGTTCAAAGAGGAACAACCATCAGCGGGAGGCATGGAAGAGGATATAGCTTCGCCGGAGCCGCTTCTGCGACGATCGCCGGCGTCGCGTCAGAGCCACATCGCAGCGATTTTGGGCGGCGCGTCAGGGCGGCGCGGTCCTCAGGCGTTGGTGAGAGAGACGGCTGCGCGGCAGCTGGATGAGCGTCGCGCCGATTGGGCTTATTCGAGGCCGGTGATCGCCGTAGACATAGCATGGAATCTGTCCTTTGCCGTCATCTCAGCCTCCGTTCTGGCTGCTTCAGCTCCCGAGAGGCCGAATGTCCCCGTTAGGGTTTGGGTCGCAATTTATGCTCTTCAGTGTCTGTTACATGTTGCTTTGGTATGGTCCGAGTACAGGCGTCGCCGTGGAGAGGAGGCGCAGATGGTTGGCGATGAGGAGAGCGGCCGTGAATCAGCCGCTGCAGATAATAACCGATCGAACATGCAGAGCCAGCGGGCTAGTTTTGTTAAACGATGTGAATCGGTTAATACCATGGCATCCTTTGTTTGGTGGATTGTTGGGTTTTACTGGGTGATATCAGGTGGCGAACATCTTGTGCAGAATGCTCCTCGTCTCTATTGGCTGGCTGTAGTGTTCCTTGCTTTTGATGTATGCTTTGCAATCTTTTGTGTTGCCTTAGCCTTTGTGATTGGTGTTGCGCTCTGCTGTTGTTTACCCTGCATTATAGCGATACTATACGCAATTGCTGGGCAGGAAGGAGCATCTGATGCGGATATCAGCCTTCTGCCAAGATATAAGTACGTGACATCCAATGATAGCAGGGAAAAGAAAGGACAAATTGGAATTATGATCCCAATAACAAGCAGCAACGGCAGCTTTGCAGAACGCATTATTTCAAGTGAATATGCGGAATGCTGCATTTGTCTGACCAGTTATGAAGAAGGGAATGAGCTCCACGCAATTCCGTGCAGTCACCACTTCCACTCGGCCTGCATTACTAAATGGCTCAAAATTAACGCGACCTGCCCTCTGTGCAAATACAATATTCTCAAGAGCAATGACTGTATGTGAAATGGTGCATTCTTCTTATAAGGAAATTTCGCACTCAAGTTTTCATCTTTCATGAGCTTTATACTTAAAATTTAAATATTTATAAAGCTATTGCTTTCAGTTATAGTTTTGTAAAGATTAAAAGATGAGTATGAGATGTGAAAGAAGGTTTGAGTGTTGTTATGAGTATAATGCTCTTCTCTTATTTGTTGTTCAATACTAATCTTTCTTGTGAATATGTAATTGTAAGGCCGATTGCCCAAGTATGATCGATAGGAGATATATTATGCTTTC

Network for GWHGAAEX001437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	287	329	6.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.310
SRP064423	SRR2545915	Juvenile tuber	25.650
SRP108465	SRR5643513	five period of Gastrodia elata	37.730
	SRR5643514	five period of Gastrodia elata	43.810
	SRR5643515	five period of Gastrodia elata	38.860
	SRR5643524	five period of Gastrodia elata	47.050
	SRR5643525	five period of Gastrodia elata	60.420
	SRR5643528	five period of Gastrodia elata	66.820
	SRR5643658	five period of Gastrodia elata	71.740
	SRR5643659	five period of Gastrodia elata	41.850
	SRR5643660	five period of Gastrodia elata	40.490
	SRR5643661	five period of Gastrodia elata	45.280
	SRR5643662	five period of Gastrodia elata	42.130
	SRR5643663	five period of Gastrodia elata	39.160
	SRR5643664	five period of Gastrodia elata	35.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.950
SRP279888	Gastro	Gastrodia elata tuber	34.25
	Juven	Juvenile tuber	41.70
	Mother_Gastro	Mother tuber of Gastrodia elata	57.72
	Mother_Juven	Mother tuber of Juvenile	52.80