Detail information of GWHGAAEX001438/evm.TU.scaffold_109.92
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|406025106|ref|YP_006705407.1| | 1.00E-17 | Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Cardinium endosymbiont cEper1 of Encarsia pergandiella] |
| KOG | KOG0504 | 0 | FOG: Ankyrin repeat |
| nr | gi|743886072|ref|XP_010910061.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZU96|Y2168_ARATH | 0 | Ankyrin repeat-containing protein At2g01680 |
| trEMBL | tr|M0SW22|M0SW22_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P05930_001} |
| TAIR | AT2G01680 | 0 | Ankyrin repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 3289702 | 3298399 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001438
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12796.6 | Ank_2 | 152 | 214 | 3.50E-12 |
| PF00023.29 | Ank | 222 | 254 | 0.00024 |
| PF13962.5 | PGG | 337 | 446 | 6.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.660 |
| SRR2545915 | Juvenile tuber | 31.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 63.540 |
| SRR5643514 | five period of Gastrodia elata | 52.150 | |
| SRR5643515 | five period of Gastrodia elata | 61.260 | |
| SRR5643524 | five period of Gastrodia elata | 56.560 | |
| SRR5643525 | five period of Gastrodia elata | 63.740 | |
| SRR5643528 | five period of Gastrodia elata | 42.580 | |
| SRR5643658 | five period of Gastrodia elata | 64.210 | |
| SRR5643659 | five period of Gastrodia elata | 48.440 | |
| SRR5643660 | five period of Gastrodia elata | 58.260 | |
| SRR5643661 | five period of Gastrodia elata | 57.870 | |
| SRR5643662 | five period of Gastrodia elata | 56.290 | |
| SRR5643663 | five period of Gastrodia elata | 55.400 | |
| SRR5643664 | five period of Gastrodia elata | 82.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 62.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 56.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 69.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 58.34 |
| Juven | Juvenile tuber | 93.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 73.28 | |
| Mother_Juven | Mother tuber of Juvenile | 96.39 |