Gene detail

Detail information of GWHGAAEX001443/evm.TU.scaffold_109.98

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383767594\|ref\|YP_005446576.1\|	1.00E-128	dihydropyrimidine dehydrogenase [Phycisphaera mikurensis NBRC 102666]
KOG	KOG1799	0	Dihydropyrimidine dehydrogenase
nr	gi\|743908660\|ref\|XP_011047788.1\|	0	PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)]-like [Populus euphratica]
trEMBL	tr\|B9N381\|B9N381_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP52050.1}
TAIR	AT3G17810	0	pyrimidine 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	3421619	3441142	+

Transcript Sequence
>GWHTAAEX001443 GTGGTACTCTAATGTATAAACTTTTTGCTGATTTTAGACCGAAGCTGGAGAAAAAAGCGTGGAAGCAGAAAATTGCGATGTTTAGGAATTGTTTGGAGCATGGCAAAGCTCTTGAAAATGACTCGGAGACAGCTCATCAGCTTGAGCTGCTGCTGTCGGAAATAGAAATTGTCCTTTCTTCCGACTTTCCCATGACACCCCCATCTGTTTCCCACGCCTCCTTTGTCTCCTTTCTCGTTCCCATTTCTTCGATCAAAGAAATGGCAGCATCTTTGGCGATTCAGGTAGCGCAAAGCACAGCGATCGGTCAGCAGTTGCATTGCAGGAGGCGGAGTCCAACAAAGTCATTTAAACTAGTAGTGAGGTCCGCTGCAGGAGAGGGGTCGCCGGCTTTAGAGCCGGATCTTAGTGTTAAAGTCAATGGTCTGGAGATGCCTAATCCGTTCGTGATCGGGTCTGGGCCGCCTGGAACCAACTACACAGTCATGAAGAGGGCGTTTGATGAGGGCTGGGGCGCCGTTATTGCCAAAACTGATATCTGCAGCAGTAAGGAGCTCTTCCGGGAAGCGCTTGATCAAGCCTCGTACCGGTTTCCATTGCAACAAGTCTCTTCTTGTCCTCATGAATCCAACAACAACTCAGTGAGAAAGCTCTTCCAAGTGTCGTTGGATTCTTCTAAGGTTATTAATGTAACACCTCGATATGCAAGGCTTCGAGCAGGATCAAATGGTTCAGCTAAGGGTCAGATTATAGGATGGGAGAATATCGAACTCATTAGTGACCGGCCCCTTGAAACAATGTTAAATGAGTTTAAGCAATTGAAAAAAGAGTATCCTGATAGGATTCTTATTGGTTCAATAATGGAAGAGTACAATAAAGCCGCATGGCACGAACTTATTGAACGAGTTGAAGAATCTGGAGTGGATGCTCTGGAAATCAATTTCTCATGTCCTCATGGAATGCCAGAGAGAAAAATGGGTGCTGCTGTTGGGCAAGATTGTGCATTATTGGAGGAGGTCAGCGGGTGGATAAATGAAAAGGCCACTGTACCTGTTTGGGCTAAGATGACTCCTAACATAACTGATATTACACAGCCTGCAAGGGTAGCTCTTAAATCCGGCTGCGAGGGGATCGCAGCTATCAACACAATTATGAGTGTCATGGGGATCAATCTAAACACATTACGCCCTGAGCCTTGTGTCGAGGGGTTTTCAACCCCTGGTGGTTACTCTTCCAAAGCTGTGCATCCCATTGCACTTGGAAAAGTAATGCAGATTGCTCAAATGATCAATGCGGAGTACAGCGGCAAAGAGTGTTCTCTGTCTGCCATCGGAGGAGTGGAAACTGGCAGTGACGCTACTGAATTTATTCTTCTGGGGGCGAATACAGTTCAGGTTTGCACTGGGGTGATGATGCATGGCTATGGCCTTGTGAAGAAGCTCTGTGATGAGCTGAAGGAGTTCATGAGAAAACATAAATTTTCCACCATAGAAGACTTCAGAGGAACCTCTCTTCAGTACTTCACGACGCACACTGATCTGGTGCGGAGACAGCAGCAGGCCATAAAACTGCGGCAGGCTATCAGGAAGGGACTCCAGTCTGATAAAGACTGGACGGGTGATGGCTTTGTGAAGGAGACAGAGAGTATGGTTTCTAACTGAATTTGTCTTTCTCTTCTTTTTTTTCATCTTTTGCACAAAGAATTATTTTAACTATGCGGATATATTGGTAAATAAATATTTGTTTTTTTTAATCTATACGCCTTCCTGCAAATAATTGAATTGGGTTTGCTATTATGTCATAGCAGCTATTTTTCATATTCTTATGCACTTAGTTTCAACCGAGATGAGTCTTACATTGTTGAAAATGTGATGATGAGAGAATCTCAGTTTTGTAAATGCGTAAATTTTACATGTAATGGCT

Network for GWHGAAEX001443

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01180.20	DHO_dh	260	485	7.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00207	DPYD	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		beta-Alanine metabolism	map00410
		Pantothenate and CoA biosynthesis	map00770
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0003824	Molecular Function	catalytic activity
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.570
SRP064423	SRR2545915	Juvenile tuber	57.200
SRP108465	SRR5643513	five period of Gastrodia elata	82.470
	SRR5643514	five period of Gastrodia elata	102.710
	SRR5643515	five period of Gastrodia elata	85.530
	SRR5643524	five period of Gastrodia elata	99.010
	SRR5643525	five period of Gastrodia elata	33.550
	SRR5643528	five period of Gastrodia elata	50.950
	SRR5643658	five period of Gastrodia elata	65.740
	SRR5643659	five period of Gastrodia elata	35.800
	SRR5643660	five period of Gastrodia elata	31.720
	SRR5643661	five period of Gastrodia elata	37.330
	SRR5643662	five period of Gastrodia elata	30.960
	SRR5643663	five period of Gastrodia elata	32.310
	SRR5643664	five period of Gastrodia elata	29.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	77.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	78.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	59.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	63.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	58.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	113.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	113.630
SRP279888	Gastro	Gastrodia elata tuber	39.20
	Juven	Juvenile tuber	73.96
	Mother_Gastro	Mother tuber of Gastrodia elata	71.55
	Mother_Juven	Mother tuber of Juvenile	64.19