Detail information of GWHGAAEX001444/evm.TU.scaffold_109.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440684418|ref|YP_007159213.1| | 1.00E-18 | GTP-binding protein HSR1-related protein [Anabaena cylindrica PCC 7122] |
| nr | gi|672114158|ref|XP_008775669.1| | 1.18E-174 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|Q38906|TOC34_ARATH | 3.00E-146 | Translocase of chloroplast 34, chloroplastic |
| trEMBL | tr|M0U9C7|M0U9C7_MUSAM | 3.00E-171 | Translocase of chloroplast {ECO:0000256|PIRNR:PIRNR038134} |
| TAIR | AT5G05000 | 9.00E-146 | translocon at the outer envelope membrane of chloroplasts 34 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 3441962 | 3471860 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001444
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04548.15 | AIG1 | 38 | 224 | 7.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0015450 | Molecular Function | P-P-bond-hydrolysis-driven protein transmembrane transporter activity |
| GO:0009707 | Cellular Component | chloroplast outer membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 254.260 |
| SRR2545915 | Juvenile tuber | 191.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.980 |
| SRR5643514 | five period of Gastrodia elata | 65.740 | |
| SRR5643515 | five period of Gastrodia elata | 60.030 | |
| SRR5643524 | five period of Gastrodia elata | 66.710 | |
| SRR5643525 | five period of Gastrodia elata | 41.600 | |
| SRR5643528 | five period of Gastrodia elata | 35.870 | |
| SRR5643658 | five period of Gastrodia elata | 39.320 | |
| SRR5643659 | five period of Gastrodia elata | 88.610 | |
| SRR5643660 | five period of Gastrodia elata | 100.200 | |
| SRR5643661 | five period of Gastrodia elata | 90.660 | |
| SRR5643662 | five period of Gastrodia elata | 102.380 | |
| SRR5643663 | five period of Gastrodia elata | 93.640 | |
| SRR5643664 | five period of Gastrodia elata | 107.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 140.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 100.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 122.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 177.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 176.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 197.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 185.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 166.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 111.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 148.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 107.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 107.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 101.15 |
| Juven | Juvenile tuber | 83.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.65 | |
| Mother_Juven | Mother tuber of Juvenile | 44.66 |