Detail information of GWHGAAEX001445/evm.TU.scaffold_109.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|156938063|ref|YP_001435859.1| | 4.00E-20 | 30S ribosomal protein S5 [Ignicoccus hospitalis KIN4/I] |
| KOG | KOG0877 | 6.00E-50 | 40S ribosomal protein S2/30S ribosomal protein S5 |
| nr | gi|224035949|gb|ACN37050.1| | 1.10E-49 | unknown [Zea mays] |
| Swissprot | tr|Q8L8Y0|RS21_ARATH | 2.00E-50 | 40S ribosomal protein S2-1 |
| trEMBL | tr|J3KUH4|J3KUH4_ORYBR | 3.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB0053G10070.1} |
| TAIR | AT1G58380 | 6.00E-50 | Ribosomal protein S5 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 3540414 | 3551153 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001445
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03719.14 | Ribosomal_S5_C | 96 | 154 | 1.70E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02981 | RP-S2e, RPS2 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.320 |
| SRR2545915 | Juvenile tuber | 0.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.330 |
| SRR5643514 | five period of Gastrodia elata | 1.550 | |
| SRR5643515 | five period of Gastrodia elata | 0.970 | |
| SRR5643524 | five period of Gastrodia elata | 1.290 | |
| SRR5643525 | five period of Gastrodia elata | 2.200 | |
| SRR5643528 | five period of Gastrodia elata | 1.420 | |
| SRR5643658 | five period of Gastrodia elata | 2.160 | |
| SRR5643659 | five period of Gastrodia elata | 1.150 | |
| SRR5643660 | five period of Gastrodia elata | 2.800 | |
| SRR5643661 | five period of Gastrodia elata | 1.480 | |
| SRR5643662 | five period of Gastrodia elata | 1.410 | |
| SRR5643663 | five period of Gastrodia elata | 2.600 | |
| SRR5643664 | five period of Gastrodia elata | 1.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.22 |
| Juven | Juvenile tuber | 1.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.30 | |
| Mother_Juven | Mother tuber of Juvenile | 1.54 |