Detail information of GWHGAAEX001455/evm.TU.scaffold_11.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3352 | 1.00E-51 | Cytochrome c oxidase, subunit Vb/COX4 |
| nr | gi|695068372|ref|XP_009381126.1| | 1.10E-64 | PREDICTED: putative cytochrome c oxidase subunit 5b-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SSB8|CX5B2_ARATH | 3.00E-52 | Cytochrome c oxidase subunit 5b-2, mitochondrial (Precursor) |
| trEMBL | tr|M0RLT3|M0RLT3_MUSAM | 4.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P27090_001} |
| TAIR | AT1G80230 | 1.00E-51 | Rubredoxin-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 376292 | 424322 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001455
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01215.18 | COX5B | 64 | 150 | 8.50E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02265 | COX5B | Metabolic pathways | map01100 |
| Oxidative phosphorylation | map00190 | ||
| Cardiac muscle contraction | map04260 | ||
| Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004129 | Molecular Function | cytochrome-c oxidase activity |
| GO:0005740 | Cellular Component | mitochondrial envelope |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 44.440 |
| SRR2545915 | Juvenile tuber | 56.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 166.270 |
| SRR5643514 | five period of Gastrodia elata | 261.350 | |
| SRR5643515 | five period of Gastrodia elata | 177.140 | |
| SRR5643524 | five period of Gastrodia elata | 252.730 | |
| SRR5643525 | five period of Gastrodia elata | 162.470 | |
| SRR5643528 | five period of Gastrodia elata | 151.800 | |
| SRR5643658 | five period of Gastrodia elata | 134.210 | |
| SRR5643659 | five period of Gastrodia elata | 82.170 | |
| SRR5643660 | five period of Gastrodia elata | 75.360 | |
| SRR5643661 | five period of Gastrodia elata | 84.000 | |
| SRR5643662 | five period of Gastrodia elata | 78.130 | |
| SRR5643663 | five period of Gastrodia elata | 81.150 | |
| SRR5643664 | five period of Gastrodia elata | 77.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 136.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 106.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 150.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 111.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 93.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 92.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 99.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 96.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 160.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 131.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 227.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 227.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 93.74 |
| Juven | Juvenile tuber | 108.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 91.82 | |
| Mother_Juven | Mother tuber of Juvenile | 73.41 |