Gene detail

Detail information of GWHGAAEX001456/evm.TU.scaffold_11.16

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1172	Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family)
nr	gi\|743769300\|ref\|XP_010914933.1\|	PREDICTED: boron transporter 4-like [Elaeis guineensis]
Swissprot	tr\|Q9XI23\|BOR4_ARATH	Boron transporter 4
trEMBL	tr\|M0S9F9\|M0S9F9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P19680_001}
TAIR	AT1G15460	HCO3- transporter family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	429727	433968	+

Transcript Sequence
>GWHTAAEX001456 CATTAATGAGATAGGTTTACTCAGGCCATAGTATTTTTGCTAGGGTTTGTTTTGAAACCCTTATATTCAATCTATGTTATTAACATTTCATGTTTAATTTTTTTAGAATGGATCAAATTAAACATCCTTTTGGCGGGGTATCCAAAGATTTCAAGAGAAGAGCTCATTGTTATAAGCAAGATTGGGTCGGTGGATTTCGATCTGGCCTTAGGATTTTGGCTCCCACTATGTTCATTTTTTTTGCTTCAGCTCTCCCTGTTATTGCTTTTGGGGAGCAACTGAGCAGGGATACAGATGGGGTGCTAAGTGTCTTGGAGACCCTTGCATCTACTTCTATTTGCGGCATCATACACTCAATATTTGGCGGGCAGCCCATGCTGATATTAGGAGTAGCAGAACCGACAGTGATAATGTACTCATATCTGTACCATTTTGCTAAAGGGCAGGAAGCTCTTGGGAGCCGTTTGTTCTTGGGATGGGTTGGCTGGATATGCTTTTGGACAGCGTGCATGCTGTTCTTCCTTGCTATTTTCAATGCATGCAATATCATTACTAGGTTTACAAGAATTGCGGGTGAACTTTTTGGAATGCTGATTACTGTTCTGTTCTTGCAAGAAGCCATTAAGGGAATACTTAGTGAATTTACAATTCCTAAAGATGAGGAACACAACATTTTGAAATACCAGTTTGACTGGATTTACACAAACGGTTTATTGGGGGTTATTTTCTCACTTGGTGTGCTGTTCACTTCTCTAAAGAGCAGAAGGGTGAGGGCTTGGAAGTATGGCACAGGATGGCTTAGATCTTTGATCGCAGACTATGGGGTACCTCTGATGGTATTGGTTTGGACAGCAGCATCTTATGCTGTTCCAAAAGATGTTCCTTCTGTGGTTCCACGAAGGCTTTCTTGTCCGCTCCCTTGGCAGAGTGAATCATCACATAATTGGACTGTTGCAAAGGATATGATATTGGTACCCCCGTTGTATATATTTGCTGCAATTGTACCTGCTATCATGGTTGCAGGCCTATACTTTTTTGACCATAACATTGCTTCTCAAATGGCTCAACAAAAGGAGTTCAATCTCAAACACCCATCTGCTTATCATTATGACATTTTTGTCCTCGGTGTTCTGGTTTTGATGTGCGGGCTTCTTGGAATCCCTCCATCAAATGGGGTTCTTCCCCAATCCCCCATGCACACAAAAAGTCTTGCAGTTCTCAAGAGACAGTTGATTCGCAAGAAGATGGTTGAGACTGCAAAGGAAAGCATACAATTACAAGCTAGCAATTCGGAAATATATGGAAAAATGCAGCAAGTGTTTATAGAAATGGATAAGAGCAACTGTACTCGAGAAGTTGCCAATGAATTAAAGAACTTGAAAGAAGCTGTCATGAGTAGCGGAGAACTAAATGGTACATTTGATCCTGAGAAGCACATTGATGCACATTTGCCTGTTCGGGTGAATGAGCAGAGGGTTACCAACCTATGTCAATCCTTACTGGTCGGTGGCTGTCTTGGAGCTATGCCTTTGATCAAGAAGATTCCCACATCAGTTCTTTGGGGCTACTTTGCTTACATGGCCATTGATAGTCTTCCTGGTAATCAGTTTTGGGAAAGGATTTTGCTTTTGTTCATCACTCCAGGAAGGCGTTACAAGGTCTTAGAAGGAATTCATGCTTCATTTGTAGAGTCTGTTCCTTTTAGGGTTATTGCAACCTTTACAATTTTCCAATTTGTCTATCTGCTAATATGCTTCGGAATTACATGGATTCCTATAGCCGGAATTCTCTTTCCACTGCCCTTTTTCCTGTTAATTAGCATCAGACAGCATTTGCTTCCCAAAGTCTTCCACCCACAGCATCTGTGGGAACTAGATGCAGCAGAGTACGAAGAAATTGCTGGAGTTCCAATTCACGATCATAACATTTCATTTCGACAGCATGACGGATCCCCGGTGTGCACTGACAGCAGTGAGGATGCTTGTGAGACCTGTGATTATGGCGCTGAAATATTGGATGAGCTTACAACTAGCAGAGGAGAGCTTAAACTCAGAACTAGAAGCTTCAATGAGGAGAGGCTCCTTCAGGCAAGTTACTGTATTGATAGTGTCTGCATAATCCGACTGAAAAAGGAAGAACAAATCTAATTTTTAATATGAACATCATTAATATTTTTATATTAATAAATACTTAACGATA

Network for GWHGAAEX001456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00955.20	HCO3_cotransp	10	186	1.50E-39
PF00955.20	HCO3_cotransp	207	379	7.10E-27
PF00955.20	HCO3_cotransp	456	546	3.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006820	Biological Process	anion transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.490
SRP064423	SRR2545915	Juvenile tuber	3.730
SRP108465	SRR5643513	five period of Gastrodia elata	3.790
	SRR5643514	five period of Gastrodia elata	4.810
	SRR5643515	five period of Gastrodia elata	2.540
	SRR5643524	five period of Gastrodia elata	4.950
	SRR5643525	five period of Gastrodia elata	2.340
	SRR5643528	five period of Gastrodia elata	2.710
	SRR5643658	five period of Gastrodia elata	3.310
	SRR5643659	five period of Gastrodia elata	1.800
	SRR5643660	five period of Gastrodia elata	0.500
	SRR5643661	five period of Gastrodia elata	0.800
	SRR5643662	five period of Gastrodia elata	0.690
	SRR5643663	five period of Gastrodia elata	0.600
	SRR5643664	five period of Gastrodia elata	0.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.540
SRP279888	Gastro	Gastrodia elata tuber	1.18
	Juven	Juvenile tuber	1.28
	Mother_Gastro	Mother tuber of Gastrodia elata	0.87
	Mother_Juven	Mother tuber of Juvenile	1.25