Gene detail

Detail information of GWHGAAEX001458/evm.TU.scaffold_11.19

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672189585\|ref\|XP_008775033.1\|	2.67E-69	PREDICTED: uncharacterized protein LOC103695472 [Phoenix dactylifera]
trEMBL	tr\|A2X274\|A2X274_ORYSI	3.00E-63	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY84934.1}
TAIR	AT4G32440_1	2.00E-22	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	664564	666952	-

Transcript Sequence
>GWHTAAEX001458 AACCAACCTAAGCTGCCTAGCAAGTTTCGTAAGAGCAAAGTGGCAAACTGCGTTCTTTGCCTGTTTTGAATGAAGCAGCGGTCTTGATTATCAGTCGCCATCCCAATTTGCGAAACAAAATGCAAAAATCCGGCGTATTTCATTAATTATCGGACGGCGAAGATCAGATCGTCGGAGAAAATCCTAAACTCATTGATCATCTCTAAGAACGAGTTTCCTCTTCCCTGTTCTCCTCGACAAATTTGAATTTACTATATTGTTATTGTTGTATGTTTCGGCATCGAGTTCTTAAACGAGTTCTTGAGAGGCTGGGAAAGAAAGAGAAGTCATAAACTGGCTAATTTGTTCGATGTTTTTGTAGTGTTTTGTCGTCCAAAGGTTTGGAATTCAGATCTTGGTATCATTTTATTCATGATTTTTAAGAAAGAAACTGAGGTGGAGGTTTTGGAGAAAGGGGAGGGGCCTTTGGGATCCTGGAGACCTGCTATTATCCTGTCAGGAAATGGTCATACTTATGCCGTAAAATATGAAAATAGTCCAAAGGAGATGACAGCATTAATGAACAAAGTGGCAAGGAAGGAGCTAAGGCCTCGCCCTCCTCCTGTAGAGGTAATAAGCTGGGCTTGTGGTGATTTTGTAGAGGTATTTGAAAGTGGCACGTGGAAGCTTGCAGAAATTCTGAGAACTATTGACTTGAATATGGTTGTTGCAAAGTTTCTGGAATCTTCAAAGGAGATTGTTGCTCCTCTTTTTCTACTCAGGATGCCCCAAACCTGGAAGGGAAACCATTGGATTCCATTACAGAAAGAATTTGTGCAATGCAGGAATGTAGATGTCAATAGTTATTCCAAGGTACAGAACTTGAGCAGTCAATTACCCAGGGTATCTATAGAGGAGCTAAATTGTAAGAGAGTTCATAAATGTGCAGAAAATTGTGGGGATGCTGTTGATCTTTGGCATTATAACTCCCGTAAATTGCCGAAGAAAAGGCCAGGGGAATGTGAACTTCCTTTTTATTCACAAGTTGGGGCTGCTGGGTCAAAGAAACTGTTCAAGAAGGAAGGGAGGTGCTATAAACTTACTGGGATGCATCTCTCAAACCAAGCATTTAAAAAGGTAGATGCTGCTAATTCACCACTAAACTCTTATGGTGGAAAGCACATGAATGATGCCTTTTATCATGAAACAGCAGGTTTTGGCCAAATAAGTATATGCTGCCAAAATTCAATTGCTAATGCTGGACTTAATCTTGTAGTGAGCTCAAACATTTTGCAAAATGACAGCACTACATCCTCTGTTGGTAGTTGTAGTGTGATTAATGGTTTTTGTAGGCCACTTCATCACAAGACAAGCCAGAGGCAAGAGCTATGTGATTATATAGATGATGCAGAATCCTGTTGTGGCTCTCCAACTAAATCATCTCATGATAAAGAAGACGAAATGCCAGAAACAATACATTGTTTAGAGTTGGATGCATACCGTACCACTTTGAGATCATTGTATTCATTGGGTTCCTTAAGTTGGGATCAAGAATCTTTATTGACAAACCTTCGTCTTGCTCTAAACATTTCAAATGATGAGCATTTATCTGAGCTAAAAGATTTAATGTCTACTAGAAATTAAATTGACCATGTATCATATTTCCTTACAGTCACCAATTTTCAACTTTATCATTACTTAATTA

Network for GWHGAAEX001458

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05641.11	Agenet	7	63	2.90E-12
PF03735.13	ENT	347	397	4.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.410
SRP064423	SRR2545915	Juvenile tuber	3.700
SRP108465	SRR5643513	five period of Gastrodia elata	2.010
	SRR5643514	five period of Gastrodia elata	2.650
	SRR5643515	five period of Gastrodia elata	2.810
	SRR5643524	five period of Gastrodia elata	2.420
	SRR5643525	five period of Gastrodia elata	5.730
	SRR5643528	five period of Gastrodia elata	7.680
	SRR5643658	five period of Gastrodia elata	4.840
	SRR5643659	five period of Gastrodia elata	4.660
	SRR5643660	five period of Gastrodia elata	3.750
	SRR5643661	five period of Gastrodia elata	3.390
	SRR5643662	five period of Gastrodia elata	4.980
	SRR5643663	five period of Gastrodia elata	4.510
	SRR5643664	five period of Gastrodia elata	3.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.250
SRP279888	Gastro	Gastrodia elata tuber	3.29
	Juven	Juvenile tuber	2.98
	Mother_Gastro	Mother tuber of Gastrodia elata	5.43
	Mother_Juven	Mother tuber of Juvenile	3.91