Gene detail

Detail information of GWHGAAEX001461/evm.TU.scaffold_11.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|150008082\|ref\|YP_001302825.1\|	9.00E-33	multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|514708280\|ref\|XP_004951497.1\|	0	PREDICTED: putative pleiotropic drug resistance protein 7-like [Setaria italica]
Swissprot	tr\|Q8GU88\|PDR7_ORYSJ	0	Putative pleiotropic drug resistance protein 7
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	1.00E-32	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	1038376	1055896	-

Transcript Sequence
>GWHTAAEX001461 ATGGAGAGCAAGGAAATGGTAGAGAAGCTCCTGAAAACGGTGGAGGATAATGAGAGGTTTCTTCTTAGGCTCAGAGGCCGCATGGAACACGCTGGGTTTGATAACCCAACAATTGAGGTCAGGTTTAACCATCTTAAAATTGATGCCATGGCGTATGCGGACAACCGAAGGCTTCCTACATTCCCCAACTTCTTTGTGAACAAGTTCATGGGGGCGTTGAGTGCACTGAATATTGTGCCTAGTGGAAAGAGATCATTATCTATTATTGATGATATCAGTGGGATTATAAGGCCTGGCAGAATGACTCTACTTTTGGGCCCTCCAGGCTCTGGGAAAACTACACTTCTAATGGCATTGTCCGGAAAGCTTAGTTCAACACTCAAGGTTTCTGGAAAAGTTACCCACAATGGTCATCATATGAATGAATTTGTCCCTCAGAGAACTTCTGCTTATATCAGTCAATATGATACGCATATTGGAGAAATGACTGTAAGAGAAACCTTAGCTTTTTCTGCAAGATGCCAAGGAGTTGGAACTCGATATGATATGCTAACTGAGCTATCAAGGAAAGAAGAAGAAGCAAATATTAAACCAGATCCAGAAATTGATGCTTATATGAAGGCCATATCTATGCAAGGACAGGAGAATGTGATGACAGAGTACATTCTTAAGATCTTGGGGTTGGAGATTTGTGCTGATACTCTGGTTGGAGATTCAATGATAAGAGGTATTTCAGGTGGACAAAAGAAGCGTGTGACAATTGGTGAAATGCTTGTTGGCCCTTCAAAAGCGCTTTTCATGGATGAAATTTCAACCGGTCTTGACAGTTCCACCACTTACCAAATAGTGAACTACATCAAGCAATTTGTTCACATTCTTGGAGGAACAACAGTGATTGCACTCCTACAGCCTACACCTGAAACCTATGAACTATTTGATGATATTATACTTCTATCTGAGGGACATATTCTGTATCAAGGCTCTCGAGAACATGTTTTGGAGTTCTTTGAATCAATGGGTTTCAAGTGCCCTGTGAGAAAAGGAGTTGCGGACTTCTTGCAAGAAGTCACTTCAAGAAAGGATCAATATCAATATTGGGCACACAAGGAGGAGCCATACCATTACATTTCTGTTAATGAATTTGTTAAATCCTTTCAGTTATTCCATGTTGGGATAAAACTAGGGGTAGACCTTAGTTCCCCTTTTGATAAAAGCAAGAACCACCCTAAATCATTGTCAACCTCAAAATATGGAATAGGCAGAAAGGAACTGCTCAAAGTATGCACTTCAAGGGAATGGCTGCTCATGAAACGAAATTCATTTATTTATATTTTCAAAGTAGTGCAACTTATCGTTATTGGCTGCATTGCAACAACGGTGTTCCTACCGGCAAAGACACACCACCACAATGAAGACGATGGAGTTATATTGTTAGGTGCAATGTTTTTAGGACTGGTCACTCATTTATTCAATGGGTTTGTTGAACTTGCAATGACCATTTCAAAGCTTCCCATACTTTACAAGCAAAGGGACCTCCTCTTCTACCCCTCATGGGCTTATGCACTGCCTACTTGGATACTCAAGATTCCAGTATCATTTTTGGAGTGTGCTATCTGGATTTGCTTGACTTACTATGTTATTGGTTTTGATCCAAATATCAATAGGTTCTTCAAACATTATATGTTACTTGTTCTAATCAGTCAATTGGCATCTGGACTCTTTCGGCTCCTTGCAGCGCTTGGGAGAGAAATGGTTGTGGCTGATACTTATGGATCATTTGCGCAACTTGTGTTGTTGATTCTTGGAGGGTTCCTTATTTCACCAAATAAAATCAAGCGGTGGTGGATATGGGGCTATTGGTCCTCCCCCTTGATGTATGCACAAAATGCAATTGCTGTGAATGAATTTCTTGGGCATAAATGGAAAAAATATGTTCCAGAATACTTCGACACATTGGGGGTTGAGATTCTCAAGATTCGTGGTATTTTCGTTGAAGCTAATTGGTATTGGATAGGTGTGGCTGCACTTCTCGGATACATTTGCTTATTCAATGCCCTCTTTGTTATCTTTCTTGACTATCTCGATCCATTTGGCCAAGAACATACAATCATGTCTAGAGGGACATTAAGGGAGAAGCAACTGTATCGAGTAGGAGCAAGTGTTGAGCAATCACTAGCAATCATTGAATCACTATCTTCACCAATCAGAGGCAAACATGGAATGGTACTCCCATTCGTTCCACTTTCACTCACTTTTGACAAAGTCAGTTACAGTATCGACATGCCCCAGGAAATGAAAGCCAAAGGTGCCTTGGAGGATAAATTGGTCTTATTGAAAGATGTTAGTGGAGCATTCAGGCCCGGAGTTCTCACAGCCTTGATGGGTGTGAGTGGAGCAGGAAAGACAACTCTGATGGATGTTCTGGCAGGTCGAAAAACAGAGGGTTACATAGATGGAGACATTCATGTATCAGGACATCCCAGGAAGCTTGAGACATTTGCAAGAATTTTTGGCTTTTGTGAGCAGAATGACATTCATTCTCCACATGTTACTGTTTTTGAATCACTCATTTACTCTGCTTGGTTGCGTCTACCTTCTGAAGTTAACAATGAAGCCAGAAAGATATTCATTGAGGAAGTTATGGAACTTTTGGAATTGAATTCATTAAAGGAAGCACTTGTAGGACTACCAGGAGTGAATGGCTTATCAACCGAACAACGAAAGAGATTGACAATTGCAGTAGAGCTTGTTGCCAACCCTTCTATAATTTTTATGGATGAGCCAACCTCTGGGCTTGATGCTAGGTCAGCAGCCATTGTGATGAGAACCGTGAGAAACACTGTCGACACTGGCCGAACAGTGGTGTGCACAATTCACCAACCCAGCATTGACATTTTTGAATCTTTTGATGAACTTTTCCTAATGAAACGTGGTGGAGAAGAGATTTATGTTGGTCCATTGGGAAGCAATTCATGCCATCTTATCACATATTTTGAAGAAATTCAAGGAGTTAAATCGATTAAAGATGGTTATAACCCTGCAACATGGATGCTTGAGGTGACCAACGTAGCACAAGAGAACATTTTAGGTGTTAACTTTGCTGAACTTTATAAGAACTCTGAGCTTTACAAAAGAAATAAAGCTCTAGTCAATGAACTAAGCACCCCTCCTCTAGGCTCAAAAGACCTTTCCTTTCCAACCAAACACGCAAAATCATTCTTGACTCAGTGCAAGGCCTGCCTCTGGAAGCAGCACAGGTCATATTGGCGCAATCCCTCTTATACTGCCACAAGAATATTTTTCACCGCTGTCATTGCTCTAATTTTTGGGACCATTTTTTGGAAACTTGGTAAAAATGTATTCACAAAGCAAGATCTGTTCAACTCGCTGGGCTCAATGTATGCGGCTGTTTTGTTCATTGGAATACAAAATGGCCAAACTGTTCAACCAATTCTTGATATTGAAAGAGATGTTTTTTACAGAGAGAAGGCAGCTGGAATGTTCTCATTGAGATCCCACACATTTTTCTTCAGGCTGTCATTTATGGTCTGATTGTCTACAGTTGCATTTCCTTCGATTGGACACTAGTAAAGTTCTTTTGGTTCGTGTTTTTCATGTTCATGACCTTCTTGTACTTCACATTCTATGGCATGATGGCAGTTGCCATGACACCGAATAGCGGCATTGCAGCCATTGTCTCCACAGCATTCTACGCAATATGGAACATATTTGCAGGATATCTAATCCCTCATCCAAGAATTCCTGCGTGGTGGAGATGGTACTCATGGGCATGCCCAGTTGCATGGACTTTTTATGGATTAGTTATCTCACAATTTGGTGACTACACTAACAAAATTGAAACAGGTGAAACAGTTGAAGAGTTTTTGAGTAGATACTTTGGGTTTAGACATGATGACTTGGGTGTAGCTGCCATAGCCATATCCTGCTTTACTATGCTATTTGCCTTTGTGTTTGCTTTTTCAATCAAAATTTTCAACTTTCAAAGAAAATGAGAAATATATGTGTAGATGGTTGTGTATAATTTTTTTATCATTAAGGCTTGCTCATACAATGATGTGCGCAAAAGGTGGGTGATCTAAATAAGTGCGCAAGAACGCTTTTTTGTGATGTACATCGGTATAATTTTCTTCAAATTCTTTAACCTAT

Network for GWHGAAEX001461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	15	64	4.00E-07
PF00005.26	ABC_tran	90	270	2.40E-18
PF01061.23	ABC2_membrane	424	636	1.60E-43
PF08370.10	PDR_assoc	641	703	6.10E-24
PF00005.26	ABC_tran	778	930	4.80E-20
PF01061.23	ABC2_membrane	1075	1175	4.50E-21

Protein Sequence

>GWHPAAEX001461
MESKEMVEKLLKTVEDNERFLLRLRGRMEHAGFDNPTIEVRFNHLKIDAMAYADNRRLPTFPNFFVNKFMGALSALNIVPSGKRSLSIIDDISGIIRPGRMTLLLGPPGSGKTTLLMALSGKLSSTLKVSGKVTHNGHHMNEFVPQRTSAYISQYDTHIGEMTVRETLAFSARCQGVGTRYDMLTELSRKEEEANIKPDPEIDAYMKAISMQGQENVMTEYILKILGLEICADTLVGDSMIRGISGGQKKRVTIGEMLVGPSKALFMDEISTGLDSSTTYQIVNYIKQFVHILGGTTVIALLQPTPETYELFDDIILLSEGHILYQGSREHVLEFFESMGFKCPVRKGVADFLQEVTSRKDQYQYWAHKEEPYHYISVNEFVKSFQLFHVGIKLGVDLSSPFDKSKNHPKSLSTSKYGIGRKELLKVCTSREWLLMKRNSFIYIFKVVQLIVIGCIATTVFLPAKTHHHNEDDGVILLGAMFLGLVTHLFNGFVELAMTISKLPILYKQRDLLFYPSWAYALPTWILKIPVSFLECAIWICLTYYVIGFDPNINRFFKHYMLLVLISQLASGLFRLLAALGREMVVADTYGSFAQLVLLILGGFLISPNKIKRWWIWGYWSSPLMYAQNAIAVNEFLGHKWKKYVPEYFDTLGVEILKIRGIFVEANWYWIGVAALLGYICLFNALFVIFLDYLDPFGQEHTIMSRGTLREKQLYRVGASVEQSLAIIESLSSPIRGKHGMVLPFVPLSLTFDKVSYSIDMPQEMKAKGALEDKLVLLKDVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTEGYIDGDIHVSGHPRKLETFARIFGFCEQNDIHSPHVTVFESLIYSAWLRLPSEVNNEARKIFIEEVMELLELNSLKEALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARSAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPLGSNSCHLITYFEEIQGVKSIKDGYNPATWMLEVTNVAQENILGVNFAELYKNSELYKRNKALVNELSTPPLGSKDLSFPTKHAKSFLTQCKACLWKQHRSYWRNPSYTATRIFFTAVIALIFGTIFWKLGKNVFTKQDLFNSLGSMYAAVLFIGIQNGQTVQPILDIERDVFYREKAAGMFSLRSHTFFFRLSFMV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.510
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	4.360
	SRR5643514	five period of Gastrodia elata	5.130
	SRR5643515	five period of Gastrodia elata	3.260
	SRR5643524	five period of Gastrodia elata	3.120
	SRR5643525	five period of Gastrodia elata	0.050
	SRR5643528	five period of Gastrodia elata	0.100
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.020
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.910
SRP279888	Gastro	Gastrodia elata tuber	0.02
	Juven	Juvenile tuber	0.01
	Mother_Gastro	Mother tuber of Gastrodia elata	1.71
	Mother_Juven	Mother tuber of Juvenile	0.48