Gene detail

Detail information of GWHGAAEX001462/evm.TU.scaffold_11.24_evm.TU.scaffold_11.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158336013\|ref\|YP_001517187.1\|	6.00E-35	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|743769376\|ref\|XP_010914975.1\|	0	PREDICTED: putative pleiotropic drug resistance protein 7 [Elaeis guineensis]
Swissprot	tr\|Q8GU88\|PDR7_ORYSJ	0	Putative pleiotropic drug resistance protein 7
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	1038376	1146334	-

Transcript Sequence
>GWHTAAEX001462 ATGGAGAGCGCTGCGAGAATGGCGAGCATGAGGGAGATCCCTCAAAGAATGGGGAGCAACATGAGAAGTTTGAGCCGAAACGTTACCACAGGGAGAACAGCCAATGCCGTATTCAGCAGATCAAGCCTAGCGGTGGACGACGAGGAGGCTTTGAGTTGGGCGGCGATTGAGAAGCTTCCCACCTACGACCGCATGAGGAAAGGAATTATTCCCGGTTCGCGCGCCATGGTACAGGAAGTCGACATTCAGGAGCTCAGCATCGAGGAGAGGAAGAAACTGCTGGAGAAGCTCGTGAAAACGGCGGAGGAGGACAACGAGAAGTTTCTTCTTAAGCTTAGGGGCCGCATGGAACGGGTTGGAATTGATAACCCGACAATTGAGGTCAGGTTTAACCATCTTAACATAGATGCTAAAGTGTATGTGGGCAATCGGGGCATTCCTACATTCCTCAACTTCTTTGTGAACAAGATCATGGGAGTGCTGAGTGCACTTCATATTGCGACTAGTCGAAAGAGACCAATATCTATTCTTCATGATATCAGCGGGATTGTAAAGCCTTGCAGAATGACTCTACTTTTGGGGCCTCCAGGGTCCGGGAAAACTACACTTTTATTGGCACTCTCTGGAAAACTGGATTCAGCACTTAAGGTTTCGGGAGAAGTTACCTACAACGGTCATCATATGAATGAATTTGTACCTCAAAGGACTTCAGCTTATATTAGTCAACATGATACACACATTGGAGAAATGACTGTAAGAGAAACCTTGGCTTTCTCTGCAAGATGCCAAGGAATTGGAACTCGATATGATATGCTAACTGAGCTATCAAGGAAAGAAGAAGAAGCAAATATTAAACCAGATCCAGAAATTGATGCTTATATGAAGGCCATATCTATGCAAGGACAGGAGAATGTGATGACAGAGTACATTCTTAAGATCTTGGGGTTGGAGATTTGTGCTGATACTCTGGTTGGAGATTCAATGATAAGAGGTATTTCAGGTGGACAAAAGAAGCGTGTGACAATTGGTGAAATGCTTGTTGGCCCTTCAAAAGCGCTTTTCATGGATGAAATTTCAACCGGTCTTGACAGTTCCACCACTTACCAAATAGTGAACTACATCAAGCAATTTGTTCACATTCTTGGAGGAACAACAGTGATTGCACTCCTACAGCCTACACCTGAAACCTATGAACTATTTGATGATATTATACTTCTATCTGAGGGACATATTCTGTATCAAGGCTCTCGAGAACATGTTTTGGAGTTCTTTGAATCAATGGGTTTCAAGTGCCCTGTGAGAAAAGGAGTTGCGGACTTCTTGCAAGAAGTCACTTCAAGAAAGGATCAATATCAATATTGGGCACACAAGGAGGAGCCATACCATTACATTTCTGTTAATGAATTTGTTAAATCCTTTCAGTTATTCCATGTTGGGATAAAACTAGGGGTAGACCTTAGTTCCCCTTTTGATAAAAGCAAGAACCACCCTAAATCATTGTCAACCTCAAAATATGGAATAGGCAGAAAGGAACTGCTCAAAGTATGCACTTCAAGGGAATGGCTGCTCATGAAACGAAATTCATTTATTTATATTTTCAAAGTAGTGCAACTTATCGTTATTGGCTGCATTGCAACAACGGTGTTCCTACCGGCAAAGACACACCACCACAATGAAGACGATGGAGTTATATTGTTAGGTGCAATGTTTTTAGGACTGGTCACTCATTTATTCAATGGGTTTGTTGAACTTGCAATGACCATTTCAAAGCTTCCCATACTTTACAAGCAAAGGGACCTCCTCTTCTACCCCTCATGGGCTTATGCACTGCCTACTTGGATACTCAAGATTCCAGTATCATTTTTGGAGTGTGCTATCTGGATTTGCTTGACTTACTATGTTATTGGTTTTGATCCAAATATCAATAGGTTCTTCAAACATTATATGTTACTTGTTCTAATCAGTCAATTGGCATCTGGACTCTTTCGGCTCCTTGCAGCGCTTGGGAGAGAAATGGTTGTGGCTGATACTTATGGATCATTTGCGCAACTTGTGTTGTTGATTCTTGGAGGGTTCCTTATTTCACCAAATAAAATCAAGCGGTGGTGGATATGGGGCTATTGGTCCTCCCCCTTGATGTATGCACAAAATGCAATTGCTGTGAATGAATTTCTTGGGCATAAATGGAAAAAATATGTTCCAGAATACTTCGACACATTGGGGGTTGAGATTCTCAAGATTCGTGGTATTTTCGTTGAAGCTAATTGGTATTGGATAGGTGTGGCTGCACTTCTCGGATACATTTGCTTATTCAATGCCCTCTTTGTTATCTTTCTTGACTATCTCGATCCATTTGGCCAAGAACATACAATCATGTCTAGAGGGACATTAAGGGAGAAGCAACTGTATCGAGTAGGAGCAAGTGTTGAGCAATCACTAGCAATCATTGAATCACTATCTTCACCAATCAGAGGCAAACATGGAATGGTACTCCCATTCGTTCCACTTTCACTCACTTTTGACAAAGTCAGTTACAGTATCGACATGCCCCAGGAAATGAAAGCCAAAGGTGCCTTGGAGGATAAATTGGTCTTATTGAAAGATGTTAGTGGAGCATTCAGGCCCGGAGTTCTCACAGCCTTGATGGGTGTGAGTGGAGCAGGAAAGACAACTCTGATGGATGTTCTGGCAGGTCGAAAAACAGAGGGTTACATAGATGGAGACATTCATGTATCAGGACATCCCAGGAAGCTTGAGACATTTGCAAGAATTTTTGGCTTTTGTGAGCAGAATGACATTCATTCTCCACATGTTACTGTTTTTGAATCACTCATTTACTCTGCTTGGTTGCGTCTACCTTCTGAAGTTAACAATGAAGCCAGAAAGATATTCATTGAGGAAGTTATGGAACTTTTGGAATTGAATTCATTAAAGGAAGCACTTGTAGGACTACCAGGAGTGAATGGCTTATCAACCGAACAACGAAAGAGATTGACAATTGCAGTAGAGCTTGTTGCCAACCCTTCTATAATTTTTATGGATGAGCCAACCTCTGGGCTTGATGCTAGGTCAGCAGCCATTGTGATGAGAACCGTGAGAAACACTGTCGACACTGGCCGAACAGTGGTGTGCACAATTCACCAACCCAGCATTGACATTTTTGAATCTTTTGATGAACTTTTCCTAATGAAACGTGGTGGAGAAGAGATTTATGTTGGTCCATTGGGAAGCAATTCATGCCATCTTATCACATATTTTGAAGAAATTCAAGGAGTTAAATCGATTAAAGATGGTTATAACCCTGCAACATGGATGCTTGAGGTGACCAACGTAGCACAAGAGAACATTTTAGGTGTTAACTTTGCTGAACTTTATAAGAACTCTGAGCTTTACAAAAGAAATAAAGCTCTAGTCAATGAACTAAGCACCCCTCCTCTAGGCTCAAAAGACCTTTCCTTTCCAACCAAACACGCAAAATCATTCTTGACTCAGTGCAAGGCCTGCCTCTGGAAGCAGCACAGGTCATATTGGCGCAATCCCTCTTATACTGCCACAAGAATATTTTTCACCGCTGTCATTGCTCTAATTTTTGGGACCATTTTTTGGAAACTTGGTAAAAATGTATTCACAAAGCAAGATCTGTTCAACTCGCTGGGCTCAATGTATGCGGCTGTTTTGTTCATTGGAATACAAAATGGCCAAACTGTTCAACCAATTCTTGATATTGAAAGAGATGTTTTTTACAGAGAGAAGGCAGCTGGAATGTATTCCGCTTTTCCTTTTGCGTTTGCACAAGTTCTCATTGAGATCCCACACATTTTTCTTCAGGCTGTCATTTATGGTCTGATTGTCTACAGTTGCATTTCCTTCGATTGGACACTAGTAAAGTTCTTTTGGTTCGTGTTTTTCATGTTCATGACCTTCTTGTACTTCACATTCTATGGCATGATGGCAGTTGCCATGACACCGAATAGCGGCATTGCAGCCATTGTCTCCACAGCATTCTACGCAATATGGAACATATTTGCAGGATATCTAATCCCTCATCCAAGAATTCCTGCGTGGTGGAGATGGTACTCATGGGCATGCCCAGTTGCATGGACTTTTTATGGATTAGTTATCTCACAATTTGGTGACTACACTAACAAAATTGAAACAGGTGAAACAGTTGAAGAGTTTTTGAGTAGATACTTTGGGTTTAGACATGATGACTTGGGTGTAGCTGCCATAGCCATATCCTGCTTTACTATGCTATTTGCCTTTGTGTTTGCTTTTTCAATCAAAATTTTCAACTTTCAAAGAAAATGAGAAATATATGTGTAGATGGTTGTGTATAATTTTTTTATCATTAAGGCTTGCTCATACAATGATGTGCGCAAAAGGTGGGTGATCTAAATAAGTGCGCAAGAACGCTTTTTTGTGATGTACATCGGTATAATTTTCTTCAAATTCTTTAACCTAT

Network for GWHGAAEX001462

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	92	152	9.90E-10
PF00005.26	ABC_tran	177	358	4.90E-18
PF01061.23	ABC2_membrane	512	724	2.10E-43
PF08370.10	PDR_assoc	729	791	7.70E-24
PF00005.26	ABC_tran	866	1018	6.30E-20
PF01061.23	ABC2_membrane	1163	1377	2.30E-55

Protein Sequence

>GWHPAAEX001462
MESAARMASMREIPQRMGSNMRSLSRNVTTGRTANAVFSRSSLAVDDEEALSWAAIEKLPTYDRMRKGIIPGSRAMVQEVDIQELSIEERKKLLEKLVKTAEEDNEKFLLKLRGRMERVGIDNPTIEVRFNHLNIDAKVYVGNRGIPTFLNFFVNKIMGVLSALHIATSRKRPISILHDISGIVKPCRMTLLLGPPGSGKTTLLLALSGKLDSALKVSGEVTYNGHHMNEFVPQRTSAYISQHDTHIGEMTVRETLAFSARCQGIGTRYDMLTELSRKEEEANIKPDPEIDAYMKAISMQGQENVMTEYILKILGLEICADTLVGDSMIRGISGGQKKRVTIGEMLVGPSKALFMDEISTGLDSSTTYQIVNYIKQFVHILGGTTVIALLQPTPETYELFDDIILLSEGHILYQGSREHVLEFFESMGFKCPVRKGVADFLQEVTSRKDQYQYWAHKEEPYHYISVNEFVKSFQLFHVGIKLGVDLSSPFDKSKNHPKSLSTSKYGIGRKELLKVCTSREWLLMKRNSFIYIFKVVQLIVIGCIATTVFLPAKTHHHNEDDGVILLGAMFLGLVTHLFNGFVELAMTISKLPILYKQRDLLFYPSWAYALPTWILKIPVSFLECAIWICLTYYVIGFDPNINRFFKHYMLLVLISQLASGLFRLLAALGREMVVADTYGSFAQLVLLILGGFLISPNKIKRWWIWGYWSSPLMYAQNAIAVNEFLGHKWKKYVPEYFDTLGVEILKIRGIFVEANWYWIGVAALLGYICLFNALFVIFLDYLDPFGQEHTIMSRGTLREKQLYRVGASVEQSLAIIESLSSPIRGKHGMVLPFVPLSLTFDKVSYSIDMPQEMKAKGALEDKLVLLKDVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTEGYIDGDIHVSGHPRKLETFARIFGFCEQNDIHSPHVTVFESLIYSAWLRLPSEVNNEARKIFIEEVMELLELNSLKEALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARSAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPLGSNSCHLITYFEEIQGVKSIKDGYNPATWMLEVTNVAQENILGVNFAELYKNSELYKRNKALVNELSTPPLGSKDLSFPTKHAKSFLTQCKACLWKQHRSYWRNPSYTATRIFFTAVIALIFGTIFWKLGKNVFTKQDLFNSLGSMYAAVLFIGIQNGQTVQPILDIERDVFYREKAAGMYSAFPFAFAQVLIEIPHIFLQAVIYGLIVYSCISFDWTLVKFFWFVFFMFMTFLYFTFYGMMAVAMTPNSGIAAIVSTAFYAIWNIFAGYLIPHPRIPAWWRWYSWACPVAWTFYGLVISQFGDYTNKIETGETVEEFLSRYFGFRHDDLGVAAIAISCFTMLFAFVFAFSIKIFNFQRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.470
SRP064423	SRR2545915	Juvenile tuber	0.130
SRP108465	SRR5643513	five period of Gastrodia elata	5.230
	SRR5643514	five period of Gastrodia elata	5.130
	SRR5643515	five period of Gastrodia elata	3.550
	SRR5643524	five period of Gastrodia elata	4.130
	SRR5643525	five period of Gastrodia elata	0.040
	SRR5643528	five period of Gastrodia elata	0.060
	SRR5643658	five period of Gastrodia elata	0.110
	SRR5643659	five period of Gastrodia elata	0.230
	SRR5643660	five period of Gastrodia elata	0.170
	SRR5643661	five period of Gastrodia elata	0.230
	SRR5643662	five period of Gastrodia elata	0.060
	SRR5643663	five period of Gastrodia elata	0.170
	SRR5643664	five period of Gastrodia elata	0.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.660
SRP279888	Gastro	Gastrodia elata tuber	0.04
	Juven	Juvenile tuber	0.15
	Mother_Gastro	Mother tuber of Gastrodia elata	1.11
	Mother_Juven	Mother tuber of Juvenile	0.56