Gene detail

Detail information of GWHGAAEX001466/evm.TU.scaffold_11.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383767221\|ref\|YP_005446202.1\|	1.00E-09	RNA-binding protein [Phycisphaera mikurensis NBRC 102666]
KOG	KOG0118	8.00E-57	FOG: RRM domain
nr	gi\|720070498\|ref\|XP_010277758.1\|	8.59E-162	PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera]
Swissprot	tr\|Q9LES2\|UBA2A_ARATH	2.00E-57	UBP1-associated protein 2A
trEMBL	tr\|A5ADJ5\|A5ADJ5_VITVI	1.00E-139	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66609.1}
TAIR	AT3G56860	8.00E-57	UBP1-associated protein 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	1374661	1377275	+

Transcript Sequence
>GWHTAAEX001466 ATGGAACCTTCTTCCAAGAAGCTCAAGGTCGACGAGAACGGTGCAGATGAACCATCTCTGTCGGCCAGTCTGACCTCCGAGGATGCTCGTAAGATCATAGAAACCTTCAACCAGGAGCAACTCGTCGACATCGTCGCCGAGGCCATGTGCCGTGACGAGGGTGTGCTCGATGCCGTTCGCCAGATTGCCGATCGTGATCCCGTTCAGCGCAAGCTCTTCATTCGGGGTCTTGGATGGGAAACTACTACCGAGAAGATTCGCTCCCTTTTCTCTAATTATGGAGATCTGTCGGAGGCCGTGGTCATTCTCGACAAAGCAACCGGGAAGAGTAAGGGTTACGGATTCGTTACGTTCCAACACATTGATGGCGCTATCCTTGCTCTTAAGGAGCCCAGCAAAAAGATTGATGGCCGCGTGACTGTCACCCAGCTTGCTGCTGCTGGACCTGCTGGATCTACCGCTTCCGCTCCTTCTACAGCCGACGTTTCGCTGAGGAAGATATTCGTGGGAAATGTCCCTGCCGATATGCCCTCCGACCGTCTTCTATCCCTCTTTAGCTCTTATGGGGACATTGCAGAAGGGCCTTTAGGATTTGATAAACAGTCGGGCAAATTCAAGGGTTATGCATTCTTCGTTTACAAAACTGTGGAAGCTGCTCAGGCTGCCCTTGCTGATCCTTTGAAGAGTATTGATGGAATTACTTTACAGTGCAAGCTGGCGACTGATGGGAAGAAGGGGAGACCTGGTGCTGGCGTTCAGGGTGTCGGTGGACTGGGCAATCCATTGGGAGGCACAGGAGCTGATGGTAATGGGGATGGGCTTGGGATGGGTTCTCAGTCCTCTATGCCTGGTTCTTTTTCAAGTCAGTTTGGACAGAATCCCTCAATTCCTGGATCTTACTCAAACCAATTTGGTGGCCCCAGTGGTGGCTTATCTTCATACGGGAATTTCTCTGGCAGCAGTGGATTCACTGGGGTTGCAGCAGCGGCTGGACAACATCACCATATGAACCCCCCTTTGCAACAGCCGATTGGCTCAGGAAATGCAACACTTTCCTCTGTGGGTGGTCAGGCGCCTTCTTCATTGGGAGGTTCTGGAGTTGGGGGCTATGCTGGAGGTGGTTTGACTGGCACGCCTTATGGTTCTTCGATGCAGTATCCAGGCTCTGGTGGATATGGTGGTTTGGGAATGGGTTCATCTCTCTACCGCACCCCAGTAGGCTCTGTTGGTATGCCTACTAGTGGGTTTCCTGATGGTGGACCATACTCTTCTTCTTCTTCTATGTACCAAGGTCCGCACCATCAACCTGCAGGGTCATCTCCTGGATCTCGAATTCCTCCGGGTGGAGGGATGTATCACAACACACCCCATTATTACTAAGGTATTGAACTTCCTCCAATTATTTTTTTTGTTATCTATATTTACATTGAACTGTTTGCCTGCTTGTTTTATTGATTATGGAGCAAGTAGTAGATGGTTTAAATATTGGATGAAATGTGGTGGGGTTGTCAAAAAATAGATGTTCGGCTCATTAATAAGCTTATGTTCAGAAACAAGACAAACTTGGACAAAAATCTTGATCTCAATTTCTTAACCAGCCTGACAAGAATAGAGCATTGTTCAGTTATGTTTGGTGCATTAAAGGATCAAATTTGCAAAAAATAATAAACATGGTCGATGAACCTATATAAATATGAGCCAATGAGCTTATACAACCAAAGCTAACTCAAGCTCACAACAAATTGTAACTTCTACTTAAACAGGAGCTGAACACAAGCTTATGAAGCCTATATTGAGCTGTACACAAATACAACCCTTCGAACAATTTCAAACACAAGCTAAGGTCGAACGTATTTAAACTCAAACAATCTGAGCTCAAACACAACATGCAAACTCTCAAACTAAGCTCATCTGCACTCTTGATATATGTTTGACTGTAATTAAGGGGTAGGTTATTTGGTTGTCAAATATTAAATGCTGCGTATTGTTATGTAATGGTATTGAGAGATTTTTGTTTTTTTGACTGTTTCATCATATTCTGATAACTACAAAATGACCTGCATGATTGATTTTTGTTGTATCTTAATGTCATTGGTAATTGGAAGGCATTTAGATATAATTGGATTATATTTATCCTAATTAGAGTTGGTCCAAAGTACTGTGAAATTGCAGCGATAATAACTAGGTCAATATGGTAAGCCATGGTGGTGTCCGCCGAGGCGGCGGCCTGCGCTAGGAGCTTGCATACCCAATGGTGGTAAACCGAACTTATACTGAAAAATTGTTTGTAAGAAGAAAAGAATAAGAATGCTTAGGAAAAAATGTCAATATTTAATATTTCTATGTCATCAATATTTTAAAGTGAGTAGTAATTTATAGTTAAATACTACGGTTGGATAACTAGAGTATAATGACAAAGTAAATAAGACTGACATTTTCATTACATTTAATTCTCTGAAATATCAGAATGTTGGCAAACCAAATTAGTTCTTAACGAATGCTTTGTATATCTGATGGCTAGCTGTTGAGTTTCTAATTTCCATGATATGGTTTTGAAGTGCTTTGCCTTTTTTCATTTGCTATTCAAGATCTATTTATCCTTGGATTGTAGTGTC

Network for GWHGAAEX001466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	72	139	5.40E-16
PF00076.21	RRM_1	167	224	7.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.010
SRP064423	SRR2545915	Juvenile tuber	43.120
SRP108465	SRR5643513	five period of Gastrodia elata	62.740
	SRR5643514	five period of Gastrodia elata	42.740
	SRR5643515	five period of Gastrodia elata	49.070
	SRR5643524	five period of Gastrodia elata	42.950
	SRR5643525	five period of Gastrodia elata	27.410
	SRR5643528	five period of Gastrodia elata	34.100
	SRR5643658	five period of Gastrodia elata	29.640
	SRR5643659	five period of Gastrodia elata	78.830
	SRR5643660	five period of Gastrodia elata	93.270
	SRR5643661	five period of Gastrodia elata	91.700
	SRR5643662	five period of Gastrodia elata	87.580
	SRR5643663	five period of Gastrodia elata	69.390
	SRR5643664	five period of Gastrodia elata	80.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	68.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	77.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	76.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	86.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	70.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.960
SRP279888	Gastro	Gastrodia elata tuber	69.51
	Juven	Juvenile tuber	100.26
	Mother_Gastro	Mother tuber of Gastrodia elata	35.72
	Mother_Juven	Mother tuber of Juvenile	54.26