Gene detail

Detail information of GWHGAAEX001472/evm.TU.scaffold_11.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|151934195\|gb\|ABS18435.1\|	4.17E-81	WRKY36 [Glycine max]
Swissprot	tr\|Q9XEC3\|WRK42_ARATH	6.00E-73	Probable WRKY transcription factor 42
trEMBL	tr\|A7LHH6\|A7LHH6_SOYBN	2.00E-81	WRKY36 {ECO:0000313\|EMBL:ABS18435.1} (Fragment)
TAIR	AT4G04450	2.00E-72	WRKY family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	1614816	1630003	-

Transcript Sequence
>GWHTAAEX001472 ATCATCTATATATTTTGGTGTATGGTGTGTAAGCATAGCAATCCCCTTTATAATATAAGTAATATTCATTTCGTCAAAGAGTAAAAAAGAATCCGACGTGGACTTAAACAATAGGTCAAGAGTCCAGATCCCCAAAGTCAATTCCACGTAGCGTTCCAACGGCAGGTGCGGTCCGGTCACCGCCCTAATCTCGAATGAGGTTACAACGGTTTCTCAATCTCGCGAAGTTCGCCGGCGCGCTCGCTGCGCCGCACTGACTTTAATATAAGCCTGTCAGATTACCGCTCTTCCCTCAAAGGCCTCAGAAGAGGGCCGCCGAAGCTCCGCAGGCTTTTTCTTCTTCCCAATTCCTCAATGGAGAGGCGAGCACGTGTCAACGATCTGGTTGACTTTTTCTCAACGGAGAAGCGCCGTCCCGACGAAAAAGAAGAAGAAGAAGAGGAGGAGGCTTTTTACCTGCCAGAGGTCAGCGATCTTTCTTTGGGAGACGGTTTATTGGGAGGATTTCGTCGGGAAAATGATCCAGCAATTAGCGAGATTGCTTTGATAAGAGGCAAGGTTGCGCAAATGGAGAAGGAGAACAAAAGGCTGAGAAGCGTCCTCGCGCAGATGAATCAGCACTATAATTATCAGTTAAACAGGCAATCAGCTGACCTCACGCGCGAGGAGAAAGCAAGGGAGGGTTCGATGAGGAAAGCGCGCGTCTCCGTCCGAGCTCGCTCAGAGGAAACTATGATGACCGACGGATGCCAGTGGAGGAAGTACGGGCAGAAGATGGCCAAAGGGAATAGCTGCCCGCGAGCTTACTATCGCTGCACCATGGCTGCAGGCTGCCCGGTCCGCAAACAAGTTCAGCGATGCGCCGACGATCGCGGCATCCTTGTCACGACGTACGAGGGAAGTCACAATCACCCGTTGCCGGAGGCGGCCATGGCGATGGCCTCCACCACTTCGTCCGCTGCAACGATGCTCCTCTCCGGCTCCATCTCCGGCGGTTCCCCCAACGCCCTGTCCGGCAGCGCCTTCCTCCCCTGCTCCATCTCCGCTACTGCGTCATTCCCCACCATCACCCTCGACCTCACCCGTTCCTCCAATTCTCTCCAGTTCCCGACAATTCCGCAGCAGCTACAAATTCCTGTTCCTGCCATCCCCAGCCGGCCGCTGGGGGGAAATTCTGTGGCCGATCCAGTGTCGGCCGCTGTCGCTGCCGTTGCCGCTCATCCCAACTTCGCAGCGGCGCTCACGGCAGCCATTACGTCAATTATAGGCTGCGGCGGGCCTCATCGAGCAGGAAGTCAATAAAGAGAGGAAAAACTGCTTTGTGTTTCTTGGATGTAATAAGGAACTGCTTTAAGTTACTTTAGATGCAAAGATAATTAAATGAGCTGAGCTCAGATGCATAAATCAGTATATAGAAAAATATAAGCTTCTTTGAGATGTCATGTTTTAAGAATATAGAACAATAGTTTGTATGATATGATTTTTAATTGTGGATCACATATGTATTCTCTAATTTTAAATGATTG

Network for GWHGAAEX001472

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.14	WRKY	130	187	2.50E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.140
SRP064423	SRR2545915	Juvenile tuber	0.410
SRP108465	SRR5643513	five period of Gastrodia elata	1.500
	SRR5643514	five period of Gastrodia elata	0.880
	SRR5643515	five period of Gastrodia elata	0.900
	SRR5643524	five period of Gastrodia elata	0.760
	SRR5643525	five period of Gastrodia elata	1.770
	SRR5643528	five period of Gastrodia elata	1.520
	SRR5643658	five period of Gastrodia elata	1.350
	SRR5643659	five period of Gastrodia elata	0.090
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.390
	SRR5643662	five period of Gastrodia elata	0.330
	SRR5643663	five period of Gastrodia elata	0.260
	SRR5643664	five period of Gastrodia elata	0.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.100
SRP279888	Gastro	Gastrodia elata tuber	0.75
	Juven	Juvenile tuber	0.46
	Mother_Gastro	Mother tuber of Gastrodia elata	4.04
	Mother_Juven	Mother tuber of Juvenile	1.60