Detail information of GWHGAAEX001475/evm.TU.scaffold_11.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-159 | FOG: PPR repeat |
| nr | gi|672152867|ref|XP_008797527.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Phoenix dactylifera] |
| Swissprot | tr|Q9STS9|PP268_ARATH | 3.00E-160 | Putative pentatricopeptide repeat-containing protein At3g47840 |
| trEMBL | tr|A0A059ASP5|A0A059ASP5_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW56721.1} |
| TAIR | AT3G47840 | 1.00E-159 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 2025074 | 2027436 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001475
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 38 | 60 | 1.1 |
| PF01535.19 | PPR | 63 | 87 | 0.008 |
| PF01535.19 | PPR | 168 | 194 | 0.0019 |
| PF01535.19 | PPR | 238 | 262 | 0.04 |
| PF01535.19 | PPR | 267 | 291 | 0.039 |
| PF01535.19 | PPR | 369 | 395 | 0.00032 |
| PF13041.5 | PPR_2 | 469 | 516 | 6.50E-10 |
| PF01535.19 | PPR | 542 | 570 | 0.33 |
| PF01535.19 | PPR | 615 | 640 | 0.32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.640 |
| SRR2545915 | Juvenile tuber | 0.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.470 |
| SRR5643514 | five period of Gastrodia elata | 0.730 | |
| SRR5643515 | five period of Gastrodia elata | 0.730 | |
| SRR5643524 | five period of Gastrodia elata | 0.680 | |
| SRR5643525 | five period of Gastrodia elata | 0.470 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 1.580 | |
| SRR5643660 | five period of Gastrodia elata | 1.140 | |
| SRR5643661 | five period of Gastrodia elata | 1.570 | |
| SRR5643662 | five period of Gastrodia elata | 2.210 | |
| SRR5643663 | five period of Gastrodia elata | 1.340 | |
| SRR5643664 | five period of Gastrodia elata | 2.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.58 |
| Juven | Juvenile tuber | 0.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.21 | |
| Mother_Juven | Mother tuber of Juvenile | 0.14 |