Detail information of GWHGAAEX001478/evm.TU.scaffold_11.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-156 | FOG: PPR repeat |
| nr | gi|672109671|ref|XP_008791373.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Phoenix dactylifera] |
| Swissprot | tr|Q9C9H9|PP114_ARATH | 3.00E-157 | Pentatricopeptide repeat-containing protein At1g71420 |
| trEMBL | tr|M5VWP7|M5VWP7_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01368.1} |
| trEMBL | tr|M5VWP7|M5VWP7_PRUPE | 6.00E-11 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01368.1} |
| trEMBL | tr|M5VWP7|M5VWP7_PRUPE | 4.00E-07 | Uncharacterized protein {ECO:0000313|EMBL:EMJ01368.1} |
| TAIR | AT1G71420 | 1.00E-156 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 2255402 | 2258541 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001478
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 147 | 172 | 0.00092 |
| PF01535.19 | PPR | 175 | 201 | 5.60E-06 |
| PF01535.19 | PPR | 208 | 234 | 1.2 |
| PF01535.19 | PPR | 247 | 269 | 0.075 |
| PF14432.5 | DYW_deaminase | 343 | 467 | 1.90E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.290 |
| SRR2545915 | Juvenile tuber | 1.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.000 |
| SRR5643514 | five period of Gastrodia elata | 3.380 | |
| SRR5643515 | five period of Gastrodia elata | 2.250 | |
| SRR5643524 | five period of Gastrodia elata | 3.030 | |
| SRR5643525 | five period of Gastrodia elata | 2.590 | |
| SRR5643528 | five period of Gastrodia elata | 1.080 | |
| SRR5643658 | five period of Gastrodia elata | 2.410 | |
| SRR5643659 | five period of Gastrodia elata | 3.440 | |
| SRR5643660 | five period of Gastrodia elata | 4.100 | |
| SRR5643661 | five period of Gastrodia elata | 3.280 | |
| SRR5643662 | five period of Gastrodia elata | 3.430 | |
| SRR5643663 | five period of Gastrodia elata | 3.420 | |
| SRR5643664 | five period of Gastrodia elata | 4.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.38 |
| Juven | Juvenile tuber | 4.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.45 | |
| Mother_Juven | Mother tuber of Juvenile | 3.89 |