Detail information of GWHGAAEX001485/evm.TU.scaffold_11.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1716 | 3.00E-144 | Dual specificity phosphatase |
| nr | gi|743758216|ref|XP_010925641.1| | 0 | PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|F4J117|LSF1_ARATH | 0 | Phosphoglucan phosphatase LSF1, chloroplastic (Precursor) |
| trEMBL | tr|D7TWP1|D7TWP1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI34916.3} |
| TAIR | AT3G01510_1 | 3.00E-144 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 2610876 | 2683127 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001485
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00782.19 | DSPc | 287 | 420 | 8.40E-11 |
| PF16561.4 | AMPK1_CBM | 445 | 527 | 1.10E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM48 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.570 |
| SRR2545915 | Juvenile tuber | 10.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.450 |
| SRR5643514 | five period of Gastrodia elata | 4.950 | |
| SRR5643515 | five period of Gastrodia elata | 5.040 | |
| SRR5643524 | five period of Gastrodia elata | 4.840 | |
| SRR5643525 | five period of Gastrodia elata | 5.720 | |
| SRR5643528 | five period of Gastrodia elata | 10.200 | |
| SRR5643658 | five period of Gastrodia elata | 4.390 | |
| SRR5643659 | five period of Gastrodia elata | 9.410 | |
| SRR5643660 | five period of Gastrodia elata | 9.070 | |
| SRR5643661 | five period of Gastrodia elata | 7.860 | |
| SRR5643662 | five period of Gastrodia elata | 9.950 | |
| SRR5643663 | five period of Gastrodia elata | 9.210 | |
| SRR5643664 | five period of Gastrodia elata | 10.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.67 |
| Juven | Juvenile tuber | 5.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.34 | |
| Mother_Juven | Mother tuber of Juvenile | 7.67 |