Gene detail

Detail information of GWHGAAEX001494/evm.TU.scaffold_11.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672135144\|ref\|XP_008791235.1\|	0	PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q7XYY2\|MED25_ARATH	0	Mediator of RNA polymerase II transcription subunit 25
trEMBL	tr\|V4TH60\|V4TH60_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR50965.1}
TAIR	AT1G25540	3.00E-102	phytochrome and flowering time regulatory protein (PFT1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	3196895	3252143	-

Transcript Sequence
>GWHTAAEX001494 GACAACCGCGAAGTTCTTTAGCAAAAAGAAACCGAAACAGAGCATCAGAGTTCGCCGGGCTGGACTTGGGTCGTTTTCATCGCGAAGTTCCCGGATCTTTGTCTTCTTCGATCCTCGGCGGTAAAGAATCCATCGTGCGCGTGTGATTCTCTTTGTAGCAGATGTCGGAGAAACAACTTATAGTGGTGGTCGAGGGCACTGCTGCTCTTGGGCCGTATTGGGAAACGGTGGTATCCGATTATCTTGAGAAAATCGTCAGGTGCTTTTGTGGAAATGAACTGAATGGTCAGAAACTTTCTGGGGCAAACCCTGAGCTTGCCTTGGTGGTCTTTAACTCCCATGGCCCCTATAGTGCTTTCTTAGTGCTAAGAACCGGGTGGACAAAAGATTTAGATGTCTTTCTTTGGTGGCTATCAAGAATACCTTTTTCTGGTGGTGGCTTTGGTGATGCTGCTATAGCTGAAGGTCTTTCTGATGCATTGACGATGTTCTCAGTGTCAACAAATGCAAGTCAGAGTCTTCCAAATCTTGATATTCAGAAACATTGCATCCTTGTTGCTGCAAGCAATCCTTATCCTTTACCCACTCCTATTTTTTCTCCTAATATCTCAAGCACAGATCAGAGTGAGAATACTGAAGCACAGAATGGGATTTGCCTTGGTGATGCAGAGGCTGTTGCAAAATCATTTGGTCAGTGTTTTGTGTCTTTATCGGTGATTTGTCCTAGGCAGCTTCCAAAACTTAGAGCAATATACACTGCAGGAAAACGCAACACTCGTTCCACAGATCTACCTGTTGATAATGCTAAGAACCCCCATTTTACTGTTTTGCTTTCTGAGAATTTTATGGATGCTCGAGCTGCATTAAGTCGTCCAATGATTGGTAATTTGACAAATAATCAAGGCTTGGTGAAACTTGATGCCGCTCTTTCCGGGCCAGCTTCAAATTCAATTCCATCAGTTAATGGGTCAATAATCAATAGGCAACTTGCTCCTCTTGGGAATATTCCTCCTGCAGCAGTAAAAGTGGAGCCAACTACAGTGTCAGCAATGGTTTCGGGACCCGGTTATCCACTTCTACCAACAATATCTAGCGTTTCTTCACAAGGTGTAGCTAGCTTGCAAGCATCTTCTCCATCTCCGACTTCACAAGAGATGAATGTTACCAGTGAAGCGATGCAGGAACATAAACCATTGGTGAATCCTATGTCACAGACACTTCGCCCTGTTGGCCCTGCTCAGGCCAATGTCAACATCTTGAACAATCTTTCTCAACATCGGCAAGTAATGAACTCTGCTTCTATTACTGGTGCAAATTCTATCGGCCTTCAAACAATTGGAGGAACACCTATGGCAATGCAGATGTCAAATATGATTTCTAGTGGAATGGTATCTTCTGCAATGCCAGGCATTACATCAGTTGCTGGATCAGGAGGAACGATGTTGCCTACAGCACAGGTTGCTCAGAACACTGCTCTTGTCTCACTTACCACTGCTTCACATGTCTCTGGAAACTCAAATATGGTTATTTCACCAGCCCTGACTAATCTGCAAACCAGCATTGGTACTGGTCAACCTGTATCTAGTATAGGTCAAGGAAATTTGACCCAAAATACACAAACAGGACAAGGTGGAATTAATATGACACCTAGTATAATGAATGTTCTTGGACCTGCTGTTATGTCTTCTGCACCTGGGACAATGATTCCTACACCGGGAATGACTCAGCAGCCAAACTTGGCTTCTCTCGGGATCAGTAACAGCACAACTATTAACATGCCTTTAACACAACAACCTCCTGGTGCTCAGCAACATCAGTCAAAGTATGTCAAAATTTGGGAGGGCGCCTTATCTGGACAAAGGCAAGGTCATCCTGTCTTTATTTGCAAGCTTGAAGGATACAGGAATTCAACTGCATCAGAAACGCTTGCTGCGGATTGGCCGCCCTCCATGCAAATTGTCCGCCTCATTGCCCAAGACCACATGAATAACAAGCAGTACGTTGGCAAGGCAGATTTCTTGGTTTTCCGGACATTAAATCAGCATGGGTTCCTCTCCCAGTTACAGGAAAAGAAGCTTTGCGCAGTCATCCAACTACCAACACAGACACTGCTTCTCTCAGTGTCAGACAAAGCTGGCCGCTTGATAGGGATGCTCTTTCCCGGGGACATGGTTGTATTCAAGCCACAAGTTGTCCAGCAACAGCAGCAGGAGCAGCAACAGAGCCAACAGAATATTCTCATTCAACAGCAGACGCAGCAACAGTTACAGCAACAGGCACAGCAACAGCTTCAGCAGCACACTCCTCAGCAGCAACAGCAGCAGCAGCAGCAACAATCTATGGTCGGTACTGTCATGAATCAAACATTCGTTCAGGGCTCTGCCAGGCCGCATATGTTGCCTCAAGGCAAGCTTCAACCTTCAAGTATGTCAAATGGGGGCTTTCTACCCTGATTAGTTTATATTTAATAGTAATTTACCATGAAATATGTATATGTATGTATGCAATGGACTACGCCAAAAACACCATTTTTCTTTCCACATCCTCTGCCATCCATCGAAGCCCATGGACGGCTCGGATTAAGGTCTGCTGCCATTTAAAAAGCTTGAGTGATGGATGGATGGATGGATGGATGGATGGTGGAGAATGAGGAAGAAAAATGGCTAATTTTGATTAGTTTAGTTTATTTAAAAAAGCTTTAGTATTTGTTCTTTGTTTATTTCTGCTTTATGGACCGTCTCATTTGCTGGCTACGCCCACTTTCTAAGAACATACAAATATTTGTTAATGGATGGCTTGCAAACTTAATCAATTATACAGCTTAGTAGATTTGAATGACGTGTATGTAATTTAACTCAAACATATGAATGCAATGCAATAAAAATATTCTGTGGTCCTAAAGGGTA

Network for GWHGAAEX001494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11265.7	Med25_VWA	3	226	3.50E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.160
SRP064423	SRR2545915	Juvenile tuber	17.720
SRP108465	SRR5643513	five period of Gastrodia elata	12.810
	SRR5643514	five period of Gastrodia elata	13.530
	SRR5643515	five period of Gastrodia elata	11.610
	SRR5643524	five period of Gastrodia elata	13.520
	SRR5643525	five period of Gastrodia elata	19.480
	SRR5643528	five period of Gastrodia elata	20.560
	SRR5643658	five period of Gastrodia elata	18.720
	SRR5643659	five period of Gastrodia elata	16.490
	SRR5643660	five period of Gastrodia elata	16.200
	SRR5643661	five period of Gastrodia elata	17.560
	SRR5643662	five period of Gastrodia elata	18.830
	SRR5643663	five period of Gastrodia elata	17.170
	SRR5643664	five period of Gastrodia elata	19.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.970
SRP279888	Gastro	Gastrodia elata tuber	20.57
	Juven	Juvenile tuber	16.46
	Mother_Gastro	Mother tuber of Gastrodia elata	18.04
	Mother_Juven	Mother tuber of Juvenile	21.12