Gene detail

Detail information of GWHGAAEX001508/evm.TU.scaffold_11.95

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694693\|ref\|YP_008797747.1\|	5.00E-92	tyrosyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG2144	0	Tyrosyl-tRNA synthetase, cytoplasmic
nr	gi\|672165742\|ref\|XP_008802786.1\|	0	PREDICTED: tyrosine--tRNA ligase, cytoplasmic [Phoenix dactylifera]
Swissprot	tr\|Q84QU8\|PPT2_ORYSJ	3.00E-174	Phosphoenolpyruvate/phosphate translocator 2, chloroplastic (Precursor)
trEMBL	tr\|U5D963\|U5D963_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN16938.1}
TAIR	AT2G33840_1	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	4182332	4276692	+

Transcript Sequence
>GWHTAAEX001508 ATGGCCGAAGCGTCAGAAGCCAGCCCCCCGGACGTTGGATCCATATCCCTCGGTTCCTCTCCTACATCATTTCCGCGGGTCGAACCCTCGCTATTATCCTTGGAAGAGAGGTTTGCCTTGGTAAGGAGTGTTGGGGAGGAGTGTATTCAGGAGGCTGAGCTACGGAACCTTCTTGAGAAGAAGCCGAACCCTGTCTGCTATGATGGATTTGAGCCGTCTGGGAGGATGCATATCGCTCAGGGCGTTATGAAGACCATAAATGTGAATAAGTTGACATCAGCTGGATGCACTGTGAAAATATGGATAGCAGACTGGTTTGCTCAACTGAACAATAAAATGGGTGGTGACCTCAAGAAAATTCGCAAAATTGGAGAATATCTTATTGAGATTTGGAAATCCGTGGGAATGAAAACTGAAATGGTTGAGTTTTTGTGGTCATCTAATGAAATAAATAGTCGAGCAGATGAATACTGGCCTCTTGTAATGGATATAGCTCGAAAGAATACTTTGCCAAGGATAGTACGGTGCTGTCAGATCATGGGCCGAAGTGAACAAGATGAGCTAACAGCAGCCCAAATATTTTATCCATGTATGCAATGTGCAGATATTTTCTTTTTAAAGGCTGACATTTGCCAGTTAGGTATGGATCAGAGAAAAGTGAATGTCCTTGCAAGAGAATATTGTGATGACATTAAGAGAAAGAACAAGCCCATTATTTTGTCACACCACATGCTTCCTGGGCTGCTGCAGGGGCAGGAGAAAATGTCAAAGAGTGATCCCTTTTCTTCAATTTATATGGAAGATGAAGAGGCTGAAGTTAATGCAAAGATAAAGAAAGCATATTGTTTGCCAAAAGTTGTTGAGGGTAATCCTTGCTTAGAATATATAAAGCATCTCATCTTCCCATGGTTTCATAAATTTGTTGTTATTCGCGATGAAGATAATGGCGGAAATAAGACATATGTTTGCATGGAAGAACTGATATCTGAGTATGAAAGTGGTTTATTGCATCCAGCTGATGTAAAACCAGCTTTAGCTAAAGCGTTAAATGAGATTTTGCAGCCTGTTCGGGATCACTTCAAGAATAATAAGGAAGCCAGAGAGCTTCTAAAAACAGTAAAGATCGCCATTTTGGTTTTAAGTGTGCAAGATGATGTTAGGAGAGTACAGTTCCCCTGCGAGTTGGGTCGGGTTCAGTATAGCCCGACCCGCGCGTTGGGCCGGGTTGGCCGTTTGGCGCTGGGTCCGAAGTGTGGGACCTGCATTGTACCCCTCGTAGTTCCACCGTTCGACACTTGGAGATCCTTCCACGTGTGCTTCAAAATTCGGAATTTTACTGCTATATGCTTCCCACCTGCTTACCCATCTGCTCCTGAAACCGAAGAGGCGAACGAACCCAAAATGCAAAGCGCAGCGTCTGCCATCTCCACTCCTCTCCTCTTAACGCGGATCTCAAACCCTAACCCTAGATGCCGGCTCTCTTCGGCCCTCCCGGCGGCGAAGCTGTCGGCTGCTGCCATCCGAACATGCAGTGTTGCAGGTGGTCTCCTCGCAATGCCACATCGGCTTGGCGGATGGAAGCATGCATTCGTTTCCTCACCTTCCCCGCGACCGGATCTTACCATGAGGGCAAGCGCCGTACCGGAATCTCTGCCAGAGAGCGTCAGCGAATCTTCTACGAAGTCTAGCGAGCTAGTGCAGACGCTGCTGCTTGGCTCGCTTTTCGGGCTTTGGTACCTATTTAACATCTACTTCAACATTTATAACAAACAAGTGCTCAAAGTTTTTCCCAACCCCCTGACAATCACAACATGTCAGTTTCTGATTGGAACTGTACTTATTCTTTTTATGTGGACCACAAATCTTTATAAAAGGCCCAAGATTACTTCTTCGCAGATTGCAGCTATTCTTCCGTTGGCTATTGTCCACACATTGGGCAACCTTTTCACTAATATGAGTCTTGGAAAAGTCGCGGTATCCTTTACACATACTATCAAAGCCATGGAACCGTTCTTCTCTGTTCTCCTCTCTGCTTTGTTCCTCGGAGAGCAACCTACTGTGTGGGTCTTGTTTTCTCTTGTGCCAATTGTTGGTGGCGTAGCTCTAGCATCTATGACCGAAGCTTCTTTTAATTGGGTGGGCTTTTGGAGTGCCATGGCTTCCAATGTTACCTTTCAATCCCGTAACGTCTTTAGCAAAAAGGTCATGGTTAAGAGAGAGGAGTCTCTGGACAATATCAACCTCTTCTCAATTATAACTGTCATGTCCCTGTTTCTCTTAGCCCCTGCCACACTCCTCCTCGAGGGTGTCAAATTCACTCCTTCATACCTGCAGTCAGCTGGTTTGAACGTTCAACAACTATATGTGAGATCCCTTATCGCAGGATTATGCTTTCATGCTTATCAGCAGGTATCATACATGATTCTGGCAAGAGTTTCTCCTGTAACCCACTCCGTCGGAAACTGCGTCAAGCGGGTTGTCGTTATCGTGACTTCTGTTCTCTTCTTCAGGACTCCGGTCTCCTCCATTAATTCCATTGGCACCGGAGTTGCACTTGCTGGAGTTTTCTTGTACTCAAGGGTGAAGAAAATCAAGCCAAAAACTGCATGAGTGGCTTACCAGCTATCTTAAATATAGTAGAATTATATTGTAGGGCTATTTATATATATATATATATATA

Network for GWHGAAEX001508

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00579.24	tRNA-synt_1b	62	354	6.70E-64
PF03151.15	TPT	571	859	2.30E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01866	YARS, tyrS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0006418	Biological Process	tRNA aminoacylation for protein translation
GO:0005524	Molecular Function	ATP binding
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity
GO:0000166	Molecular Function	nucleotide binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	78.760
SRP064423	SRR2545915	Juvenile tuber	72.360
SRP108465	SRR5643513	five period of Gastrodia elata	52.160
	SRR5643514	five period of Gastrodia elata	47.040
	SRR5643515	five period of Gastrodia elata	65.790
	SRR5643524	five period of Gastrodia elata	54.020
	SRR5643525	five period of Gastrodia elata	43.720
	SRR5643528	five period of Gastrodia elata	79.250
	SRR5643658	five period of Gastrodia elata	47.630
	SRR5643659	five period of Gastrodia elata	64.940
	SRR5643660	five period of Gastrodia elata	65.160
	SRR5643661	five period of Gastrodia elata	62.710
	SRR5643662	five period of Gastrodia elata	73.470
	SRR5643663	five period of Gastrodia elata	67.540
	SRR5643664	five period of Gastrodia elata	57.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	67.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.020
SRP279888	Gastro	Gastrodia elata tuber	84.89
	Juven	Juvenile tuber	52.46
	Mother_Gastro	Mother tuber of Gastrodia elata	71.51
	Mother_Juven	Mother tuber of Juvenile	143.63