Detail information of GWHGAAEX001512/evm.TU.scaffold_11.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-136 | FOG: PPR repeat |
| nr | gi|672138245|ref|XP_008792873.1| | 0 | PREDICTED: uncharacterized protein LOC103709351 [Phoenix dactylifera] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 8.00E-137 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|D7TWL0|D7TWL0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI34885.3} |
| trEMBL | tr|D7TWL0|D7TWL0_VITVI | 2.00E-22 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI34885.3} |
| TAIR | AT2G22070 | 3.00E-136 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 4464180 | 4466623 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001512
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 130 | 160 | 0.00082 |
| PF01535.19 | PPR | 161 | 185 | 0.048 |
| PF13041.5 | PPR_2 | 190 | 236 | 1.10E-09 |
| PF12854.6 | PPR_1 | 288 | 318 | 1.00E-05 |
| PF13041.5 | PPR_2 | 321 | 369 | 4.40E-09 |
| PF13041.5 | PPR_2 | 453 | 501 | 2.80E-10 |
| PF01535.19 | PPR | 529 | 555 | 0.047 |
| PF01535.19 | PPR | 557 | 587 | 2.50E-05 |
| PF01535.19 | PPR | 594 | 619 | 0.66 |
| PF01535.19 | PPR | 629 | 653 | 0.00094 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.390 |
| SRR2545915 | Juvenile tuber | 1.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.130 |
| SRR5643514 | five period of Gastrodia elata | 0.920 | |
| SRR5643515 | five period of Gastrodia elata | 1.030 | |
| SRR5643524 | five period of Gastrodia elata | 0.760 | |
| SRR5643525 | five period of Gastrodia elata | 0.390 | |
| SRR5643528 | five period of Gastrodia elata | 0.190 | |
| SRR5643658 | five period of Gastrodia elata | 0.170 | |
| SRR5643659 | five period of Gastrodia elata | 0.540 | |
| SRR5643660 | five period of Gastrodia elata | 0.870 | |
| SRR5643661 | five period of Gastrodia elata | 0.570 | |
| SRR5643662 | five period of Gastrodia elata | 0.840 | |
| SRR5643663 | five period of Gastrodia elata | 0.750 | |
| SRR5643664 | five period of Gastrodia elata | 0.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.08 |
| Juven | Juvenile tuber | 1.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.34 | |
| Mother_Juven | Mother tuber of Juvenile | 0.86 |