Detail information of GWHGAAEX001515/evm.TU.scaffold_11.106


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG1498026S proteasome regulatory complex, subunit RPN5/PSMD12
nrgi|672156424|ref|XP_008797909.1|0PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A isoform X2 [Phoenix dactylifera]
Swissprottr|Q9FIB6|PS12A_ARATH026S proteasome non-ATPase regulatory subunit 12 homolog A
trEMBLtr|B3TM04|B3TM04_ELAGV026S proteasome subunit RPN5b {ECO:0000313|EMBL:ACF06585.1}
TAIRAT5G09900026S proteasome regulatory subunit, putative (RPN5)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001345950394624735-
Transcript Sequence

Network for GWHGAAEX001515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01399.26PCI2893971.90E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03035PSMD12, RPN5 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms141.000
SRR2545915Juvenile tuber139.970
SRP108465SRR5643513five period of Gastrodia elata85.840
SRR5643514five period of Gastrodia elata89.590
SRR5643515five period of Gastrodia elata80.640
SRR5643524five period of Gastrodia elata81.030
SRR5643525five period of Gastrodia elata87.000
SRR5643528five period of Gastrodia elata101.880
SRR5643658five period of Gastrodia elata99.290
SRR5643659five period of Gastrodia elata82.190
SRR5643660five period of Gastrodia elata79.900
SRR5643661five period of Gastrodia elata79.220
SRR5643662five period of Gastrodia elata82.250
SRR5643663five period of Gastrodia elata82.050
SRR5643664five period of Gastrodia elata77.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1100.780
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1103.990
SRR6049657Rhizomagastrodiae_C368-T07_good_1114.760
SRR6049658Rhizomagastrodiae_C368-T04_good_1117.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1142.090
SRR6049660Rhizomagastrodiae_C368-T01_good_1113.430
SRR6049661Rhizomagastrodiae_C368-T04_good_1124.080
SRR6049662Rhizomagastrodiae_C368-T01_good_1108.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1110.870
SRR6049664Rhizomagastrodiae_C368-T10_good_1103.360
SRR6049665Rhizomagastrodiae_C368-T10_good_1103.360
SRP279888GastroGastrodia elata tuber 76.20
JuvenJuvenile tuber84.64
Mother_GastroMother tuber of Gastrodia elata 74.63
Mother_JuvenMother tuber of Juvenile 87.06