Detail information of GWHGAAEX001526/evm.TU.scaffold_11.117


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24963.00E-110Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
nrgi|695059552|ref|XP_009418139.1|8.71E-172PREDICTED: cyclin-H1-1 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q10D80|CCH11_ORYSJ2.00E-149Cyclin-H1-1
trEMBLtr|M0U1N4|M0U1N4_MUSAM3.00E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19270_001}
TAIRAT5G276203.00E-110cyclin H;1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001351489805179210+
Transcript Sequence

Network for GWHGAAEX001526

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.22Cyclin_N741698.20E-10
PF16899.4Cyclin_C_21742966.10E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06634CCNH Basal transcription factors map03022
Nucleotide excision repairmap03420
Cell cyclemap04110

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.970
SRR2545915Juvenile tuber20.850
SRP108465SRR5643513five period of Gastrodia elata14.200
SRR5643514five period of Gastrodia elata15.560
SRR5643515five period of Gastrodia elata11.180
SRR5643524five period of Gastrodia elata14.720
SRR5643525five period of Gastrodia elata8.610
SRR5643528five period of Gastrodia elata8.340
SRR5643658five period of Gastrodia elata8.600
SRR5643659five period of Gastrodia elata14.290
SRR5643660five period of Gastrodia elata14.760
SRR5643661five period of Gastrodia elata14.060
SRR5643662five period of Gastrodia elata10.170
SRR5643663five period of Gastrodia elata10.340
SRR5643664five period of Gastrodia elata8.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.670
SRR6049655Rhizomagastrodiae_C368-T10_good_19.890
SRR6049656Rhizomagastrodiae_C368-T07_good_111.760
SRR6049657Rhizomagastrodiae_C368-T07_good_19.380
SRR6049658Rhizomagastrodiae_C368-T04_good_110.080
SRR6049659Rhizomagastrodiae_C368-T04_good_18.470
SRR6049660Rhizomagastrodiae_C368-T01_good_19.640
SRR6049661Rhizomagastrodiae_C368-T04_good_18.960
SRR6049662Rhizomagastrodiae_C368-T01_good_112.210
SRR6049663Rhizomagastrodiae_C368-T01_good_110.120
SRR6049664Rhizomagastrodiae_C368-T10_good_112.550
SRR6049665Rhizomagastrodiae_C368-T10_good_112.550
SRP279888GastroGastrodia elata tuber 13.72
JuvenJuvenile tuber26.77
Mother_GastroMother tuber of Gastrodia elata 12.37
Mother_JuvenMother tuber of Juvenile 15.75