Detail information of GWHGAAEX001530/evm.TU.scaffold_11.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 2.00E-54 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|573913489|ref|XP_006644426.1| | 2.10E-80 | PREDICTED: homeobox-leucine zipper protein HOX3-like [Oryza brachyantha] |
| Swissprot | tr|Q0JKX1|HOX3_ORYSJ | 2.00E-81 | Homeobox-leucine zipper protein HOX3 |
| trEMBL | tr|J3L2A6|J3L2A6_ORYBR | 8.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G33620.1} |
| TAIR | AT2G01430 | 2.00E-54 | homeobox-leucine zipper protein 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 5404451 | 5407078 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001530
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 87 | 115 | 4.70E-09 |
| PF02183.17 | HALZ | 117 | 150 | 4.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.090 |
| SRR2545915 | Juvenile tuber | 4.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.570 |
| SRR5643514 | five period of Gastrodia elata | 7.660 | |
| SRR5643515 | five period of Gastrodia elata | 5.250 | |
| SRR5643524 | five period of Gastrodia elata | 5.080 | |
| SRR5643525 | five period of Gastrodia elata | 1.030 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.570 | |
| SRR5643660 | five period of Gastrodia elata | 0.690 | |
| SRR5643661 | five period of Gastrodia elata | 2.630 | |
| SRR5643662 | five period of Gastrodia elata | 0.180 | |
| SRR5643663 | five period of Gastrodia elata | 0.260 | |
| SRR5643664 | five period of Gastrodia elata | 0.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 77.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 77.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.39 | |
| Mother_Juven | Mother tuber of Juvenile | 0.91 |