Detail information of GWHGAAEX001535/evm.TU.scaffold_11.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108759811|ref|YP_631091.1| | 8.00E-168 | sphingosine-1-phosphate lyase [Myxococcus xanthus DK 1622] |
| KOG | KOG1383 | 0 | Glutamate decarboxylase/sphingosine phosphate lyase |
| nr | gi|672178779|ref|XP_008809535.1| | 0 | PREDICTED: sphingosine-1-phosphate lyase-like [Phoenix dactylifera] |
| Swissprot | tr|Q52RG7|SGPL_ORYSJ | 0 | Sphingosine-1-phosphate lyase (Precursor) |
| trEMBL | tr|M5XPP9|M5XPP9_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ23503.1} |
| TAIR | AT1G27980 | 0 | dihydrosphingosine phosphate lyase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 5810730 | 5835808 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001535
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00282.18 | Pyridoxal_deC | 167 | 445 | 6.60E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01634 | SGPL1, DPL1 | Metabolic pathways | map01100 |
| Sphingolipid metabolism | map00600 | ||
| Sphingolipid signaling pathway | map04071 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0016831 | Molecular Function | carboxy-lyase activity |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 153.480 |
| SRR2545915 | Juvenile tuber | 215.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 147.600 |
| SRR5643514 | five period of Gastrodia elata | 125.040 | |
| SRR5643515 | five period of Gastrodia elata | 134.410 | |
| SRR5643524 | five period of Gastrodia elata | 128.490 | |
| SRR5643525 | five period of Gastrodia elata | 193.800 | |
| SRR5643528 | five period of Gastrodia elata | 173.660 | |
| SRR5643658 | five period of Gastrodia elata | 204.500 | |
| SRR5643659 | five period of Gastrodia elata | 125.480 | |
| SRR5643660 | five period of Gastrodia elata | 128.740 | |
| SRR5643661 | five period of Gastrodia elata | 133.540 | |
| SRR5643662 | five period of Gastrodia elata | 124.410 | |
| SRR5643663 | five period of Gastrodia elata | 123.340 | |
| SRR5643664 | five period of Gastrodia elata | 138.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 135.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 163.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 121.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 135.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 94.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 105.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 107.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 93.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 92.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 88.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 147.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 147.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 135.45 |
| Juven | Juvenile tuber | 165.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 122.86 | |
| Mother_Juven | Mother tuber of Juvenile | 152.52 |