Gene detail

Detail information of GWHGAAEX001537/evm.TU.scaffold_11.133

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|39934015\|ref\|NP_946291.1\|	5.00E-06	hypothetical protein RPA0938 [Rhodopseudomonas palustris CGA009]
nr	gi\|743866941\|ref\|XP_010905188.1\|	3.56E-128	PREDICTED: F-box protein At1g67340-like [Elaeis guineensis]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	5.00E-119	F-box protein At1g67340
trEMBL	tr\|M0U4J5\|M0U4J5_MUSAM	5.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P29380_001}
TAIR	AT1G67340	2.00E-118	HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	5899974	5902400	-

Transcript Sequence
>GWHTAAEX001537 TATCAGGGTTAAAACCGTCATTTCATACGAGCAATGGCCTTAAAGTTCTTCCTTCACCTGTCGGATCGATTATATAATAAGCCTTCAAGAGGCATCAAATCACACAAGCGCAGAAATCCCCGATGCAGACACGAAGCGGGCTTCTGCTATCTCGCCGGTCGCCGTCGGAATACGGCGGCGCAGTAGCCGGAAAACGAGCTCGGGCTCCGACCATCAATTTCTTCGACAATCTCCCCGACGATCTTCTTCTCCTGACCTTCTCCAAAGTCTCCGTTACCGCTTCCTGTCCTTCGGATATCATAAGCATCCTCCTCACATGCAAGAGATTCAGAGCGCTGGCGATGCACCCGCGGGTTCTTTCCCGCGTATCGGAGAAGGGAGTGTCCGTGAGAGCCTCCAGATGGTCAGAATCGGCGCACCGATTCCTCAAGATCTGCGCGGACGCCGGGAGCCCGGAAGCTAGCTACGCCCTCGGAATGATCCACTTCTACTGCCTCGAAAGCAGGGGGAGCGGGGCGTCGCTGCTGGTAAGGGCGGCGTCGGCAGGGCTTCACCCGGCAGCGCTGTACTCGCTCGCTGTCATGCAGTTTAACGGCAGCGAAGGGGGATCGAGGAACGGGAAGGATCTCAGCGCAGGAGTAGCGCTCTGCGCCCGCTCGGCGTGCCTGGGCAACGTGGACGCTCTGCGTGAGCTGGGCCACTGCCTCCACGACGGGTACGGAGTGGGGCGGAACGTCGCAGAAGGACGCAGATTTCTCATTCACGCGAACGCGCGGGAACTCGGGAAAGGTCTTTTGGGGCGAGAGGCGGCGGCGGCGGCGGCGGAGGGGAGAGGAATGAATCGGTTCATGGTGGAGTGGTTTGACGGGAGGAAGGAGGGGAGAGAGAAGGAGGGGCTGAGAATGTGCTCCCATGGAGGGTGCGGGAGGCCGGAGACGAGGAGGCATGAGTTCAGGCGGTGCTCTGTTTGTGGGATTGTCAATTATTGCTCGAGGGCGTGTCAGGCGATGCACTGGAAGGTTGAGCATAAGCTGCAGTGCGCGCCGATGCAGAGATGGATTGATGCTGCTGGTGCGGATGCAGGGCTGGAACAGGGGAGGAGGGGTATGTGAAAATTTTGGCTCCGCAGTACAAAAAACTTGAATCCCTCGGATCTCCCTTTCTCCATCAAAAAGACTCATCAAAGCATGCCGGAAACAGCTGAGGACAACCGTCAAATCTCGGCCCTCCATCGCCAATACTGCAGCCTCCTGCGCGATTGGGATTTCTACAAAACCTCCATTCCCCACCGACGACAGAAGCGCCGCATCTCCCCCAAAAAGGCCGAGCCCATAGGTTTGGGGGAGAAGCCGATGGAGAGGAGGGCGGCATGGGTTTGGATTCTGACGGCCGCCCTCACTGTTGCTTTCTTTTCGGTTCGGGTCGTGTTTGGTTCGGAGCAGGCGGGTCGCGGCTGCCTCCTCACTCCTACGTGATGAACCCATAGCGATCAACAGCGTTTTTTTTTGGCATGTTTACGCCAATCCAAAAAATCTATTTTTTCTATATTCTCAACTAATATGCTTAATTATAATTTTATAATTGCATT

Network for GWHGAAEX001537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.17	zf-MYND	267	306	7.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.020
SRP064423	SRR2545915	Juvenile tuber	2.120
SRP108465	SRR5643513	five period of Gastrodia elata	17.660
	SRR5643514	five period of Gastrodia elata	8.810
	SRR5643515	five period of Gastrodia elata	10.430
	SRR5643524	five period of Gastrodia elata	10.810
	SRR5643525	five period of Gastrodia elata	0.350
	SRR5643528	five period of Gastrodia elata	0.160
	SRR5643658	five period of Gastrodia elata	0.160
	SRR5643659	five period of Gastrodia elata	2.750
	SRR5643660	five period of Gastrodia elata	2.010
	SRR5643661	five period of Gastrodia elata	3.950
	SRR5643662	five period of Gastrodia elata	4.990
	SRR5643663	five period of Gastrodia elata	4.190
	SRR5643664	five period of Gastrodia elata	3.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.850
SRP279888	Gastro	Gastrodia elata tuber	6.61
	Juven	Juvenile tuber	4.05
	Mother_Gastro	Mother tuber of Gastrodia elata	3.93
	Mother_Juven	Mother tuber of Juvenile	4.04