Detail information of GWHGAAEX001539/evm.TU.scaffold_11.139
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521459603|ref|YP_008153931.1| | 1.00E-117 | ATP-dependent helicase [Sorangium cellulosum So0157-2] |
| KOG | KOG0922 | 0 | DEAH-box RNA helicase |
| nr | gi|672172549|ref|XP_008806370.1| | 0 | PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q38953|DHX8_ARATH | 0 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|F2EHS9|F2EHS9_HORVD | 0 | Predicted protein {ECO:0000313|EMBL:BAK06901.1} |
| TAIR | AT1G27900 | 0 | RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 6106314 | 6180285 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001539
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13401.5 | AAA_22 | 21 | 150 | 2.60E-07 |
| PF00271.30 | Helicase_C | 205 | 335 | 2.10E-13 |
| PF04408.22 | HA2 | 400 | 487 | 1.70E-17 |
| PF07717.15 | OB_NTP_bind | 557 | 638 | 1.60E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12818 | DHX8, PRP22 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004386 | Molecular Function | helicase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.060 |
| SRR2545915 | Juvenile tuber | 33.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.270 |
| SRR5643514 | five period of Gastrodia elata | 16.360 | |
| SRR5643515 | five period of Gastrodia elata | 16.700 | |
| SRR5643524 | five period of Gastrodia elata | 16.510 | |
| SRR5643525 | five period of Gastrodia elata | 15.910 | |
| SRR5643528 | five period of Gastrodia elata | 12.350 | |
| SRR5643658 | five period of Gastrodia elata | 14.440 | |
| SRR5643659 | five period of Gastrodia elata | 19.850 | |
| SRR5643660 | five period of Gastrodia elata | 19.540 | |
| SRR5643661 | five period of Gastrodia elata | 17.140 | |
| SRR5643662 | five period of Gastrodia elata | 22.160 | |
| SRR5643663 | five period of Gastrodia elata | 20.860 | |
| SRR5643664 | five period of Gastrodia elata | 21.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.87 |
| Juven | Juvenile tuber | 18.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.80 | |
| Mother_Juven | Mother tuber of Juvenile | 10.91 |