Detail information of GWHGAAEX001540/evm.TU.scaffold_11.140


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|289596760|ref|YP_003483456.1|6.00E-158histone acetyltransferase, ELP3 family [Aciduliprofundum boonei T469]
KOGKOG25350RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase
nrgi|672174115|ref|XP_008807205.1|0PREDICTED: elongator complex protein 3 [Phoenix dactylifera]
Swissprottr|Q7X7L3|ELP3_ORYSJ0Elongator complex protein 3
trEMBLtr|C5YAW5|C5YAW5_SORBI0Putative uncharacterized protein Sb06g020610 {ECO:0000313|EMBL:EES12405.1}
TAIRAT5G503200radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001362105796245636+
Transcript Sequence

Network for GWHGAAEX001540

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04055.20Radical_SAM1203144.90E-17
PF16199.4Radical_SAM_C3264051.20E-31
PF00583.24Acetyltransf_14125491.70E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGNAT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0051536Molecular Functioniron-sulfur cluster binding
GO:0008080Molecular FunctionN-acetyltransferase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.190
SRR2545915Juvenile tuber19.920
SRP108465SRR5643513five period of Gastrodia elata18.260
SRR5643514five period of Gastrodia elata16.140
SRR5643515five period of Gastrodia elata13.300
SRR5643524five period of Gastrodia elata13.180
SRR5643525five period of Gastrodia elata19.190
SRR5643528five period of Gastrodia elata20.450
SRR5643658five period of Gastrodia elata20.650
SRR5643659five period of Gastrodia elata17.610
SRR5643660five period of Gastrodia elata18.960
SRR5643661five period of Gastrodia elata17.720
SRR5643662five period of Gastrodia elata18.050
SRR5643663five period of Gastrodia elata20.590
SRR5643664five period of Gastrodia elata20.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.160
SRR6049655Rhizomagastrodiae_C368-T10_good_124.500
SRR6049656Rhizomagastrodiae_C368-T07_good_119.690
SRR6049657Rhizomagastrodiae_C368-T07_good_125.440
SRR6049658Rhizomagastrodiae_C368-T04_good_124.710
SRR6049659Rhizomagastrodiae_C368-T04_good_127.020
SRR6049660Rhizomagastrodiae_C368-T01_good_126.050
SRR6049661Rhizomagastrodiae_C368-T04_good_123.760
SRR6049662Rhizomagastrodiae_C368-T01_good_121.030
SRR6049663Rhizomagastrodiae_C368-T01_good_122.160
SRR6049664Rhizomagastrodiae_C368-T10_good_119.850
SRR6049665Rhizomagastrodiae_C368-T10_good_119.850
SRP279888GastroGastrodia elata tuber 24.26
JuvenJuvenile tuber24.13
Mother_GastroMother tuber of Gastrodia elata 16.87
Mother_JuvenMother tuber of Juvenile 18.07