Detail information of GWHGAAEX001542/evm.TU.scaffold_11.142
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428316317|ref|YP_007114199.1| | 2.00E-117 | coproporphyrinogen III oxidase, anaerobic [Oscillatoria nigro-viridis PCC 7112] |
| nr | gi|743814415|ref|XP_010930027.1| | 0 | PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Elaeis guineensis] |
| trEMBL | tr|A0A096RNT3|A0A096RNT3_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G105436_P01} |
| TAIR | AT5G63290 | 7.00E-176 | Radical SAM superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 6368535 | 6382145 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001542
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04055.20 | Radical_SAM | 56 | 238 | 9.20E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006779 | Biological Process | porphyrin-containing compound biosynthetic process |
| GO:0004109 | Molecular Function | coproporphyrinogen oxidase activity |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.270 |
| SRR2545915 | Juvenile tuber | 3.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.040 |
| SRR5643514 | five period of Gastrodia elata | 3.240 | |
| SRR5643515 | five period of Gastrodia elata | 3.020 | |
| SRR5643524 | five period of Gastrodia elata | 2.200 | |
| SRR5643525 | five period of Gastrodia elata | 0.530 | |
| SRR5643528 | five period of Gastrodia elata | 0.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.480 | |
| SRR5643659 | five period of Gastrodia elata | 5.280 | |
| SRR5643660 | five period of Gastrodia elata | 5.240 | |
| SRR5643661 | five period of Gastrodia elata | 5.740 | |
| SRR5643662 | five period of Gastrodia elata | 4.600 | |
| SRR5643663 | five period of Gastrodia elata | 4.580 | |
| SRR5643664 | five period of Gastrodia elata | 3.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.68 |
| Juven | Juvenile tuber | 5.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.80 | |
| Mother_Juven | Mother tuber of Juvenile | 2.67 |