Gene detail

Detail information of GWHGAAEX001543/evm.TU.scaffold_11.143

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4159	1.00E-58	Predicted E3 ubiquitin ligase
nr	gi\|743814427\|ref\|XP_010930031.1\|	9.41E-94	PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 1-like [Elaeis guineensis]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	3.00E-06	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|I1N7J7\|I1N7J7_SOYBN	2.00E-83	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G24210.1}
TAIR	AT3G27330	1.00E-58	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	6403993	6414633	-

Transcript Sequence
>GWHTAAEX001543 AAACGGAGCATTGTAGCCGTTGGAAGACTTGAAGTCACTATCTCCGACCAAACTATTCCAAACCAAAAGAACGTTTTTTCCCATTCTCTCGCAGGCGAATCGAATCGGAAGCGGAGGAAAGGACTCACAAATATGGCTGCAGCAGTCGAAGAAAGCGCAAGCAGAACACGCTCTCGAAGCAGACTCAAGAGATCTCCTCGATCGGAGGAAACAGCGGAGATGCGGACCTTTCTTAGCCCTACATTCAGATCCGCAGCGGCCTTAGCTGGCTGGGACGAAGAGGCCCTTCTCCATGCCTCCCTCGTTGTCGAAGACACTCCTGAAAGAGAATCTCAGCATAAGAAGCGCCTTAATCAGAATATCAAGACCCCTATTACCAGTAGTTCAGGTTCTACCGGCAGGAAACGGAGATCAAGACGGCAACTTGCAGATCCAATACCCGCCGTCGTTCTTTGCCTCGATGATGACGAGCAGATTTCTTCTCGTCAAGAAGTTGAGACTATAAGAAAAGAACTGGAGGGTTGTATACTTCCCAAAAAGAAGAAAGATAATAGAGGAGCAGAAGTTTCAGCAGAAATTGTTGTTGGAAAAGGTCTCCCATGTTTGGATCGGCTGAGGGAGGAACTCTCCTGCGCTATTTGTTGGGAGATTTGCTATGAGCCGAGTACCACTCCTTGTGGCCACAGTTTTTGCAAGAAATGCTTGGAAAGTGCTGCTAACAAATGTGGAAAAACTTGCCCAAAGTGCAGGCAATTAATCAGCAATGCAAGATTAGGCGCAGTGAACACAGTTCTATGGAACACCATTCAGCTCTTATTTCCAGAAGAAATGGAGGTTCGGAAGAAGGCAACAACCCACCTGAATACTTTTAGCACAAAAGATACTTCCAGATGCGACTCAAAATTGGATAGAGTTCTCAGGAACAGAAGACGTAGAAATTTTCATAACAACAGCAGCTCAAGCGATGGCTTCAGAACCGCAAGCGAAGTTTTGGAAGTGAGCTCGGGAATTAGGCACAGCCGAAGAAGGCTTAATGCAAGCCAATTTGAAGATGCTGCCTTGGCCCTTAGGTTGCAAAGGGAAGAATTTTTGGAAGCATTTAGGACTTCAAGAAGGCAACGCAGTTATTAATATCATGGCAGATTCCAGAGCCTTATCTTTTAATGTCAAAGAAAGAATTTTTGTGAACACCCAAAACATGGGTATTACGAATGAGTCTTGTTAATTAGTTATAAGTTGAAATATGCGTGAGAAGACAGTGTTTATCTTTCTTATGCCAACATTGCTGTTTACCTTTTTTTGTAGGGTACATATTTCTCTACTTTGGGTATCTTGGATCAATTATGGATCAGTTTATTAGAAGTAGTCATTTCGAAAAACCTTTTGAATGCTTTAGATTGAAACTACTCATGCCCTGTTCAACTAATAGGTGAATTTAATCGGCATTTTTCATGGATATTTTAATATCCTATGCTTAGTTAGCATACTTATTATCTTATTCATACAGTTGTAATATAATGTTTCAACAAGGTGGTTTTGCAAACTGTCATGTGGTAGTTATATCATGTGTAGGATCTAGAATGTGATGCTATGGCGTGTGTGATCGATCATTAGCTACATGCAACTGGATGGAAGTGTATGGTCTTCAATCCTATTTTGTTTTCAAATTTTGTCGTATCG

Network for GWHGAAEX001543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.5	zf-C3HC4_2	167	205	9.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.490
SRP064423	SRR2545915	Juvenile tuber	7.430
SRP108465	SRR5643513	five period of Gastrodia elata	1.920
	SRR5643514	five period of Gastrodia elata	2.220
	SRR5643515	five period of Gastrodia elata	2.820
	SRR5643524	five period of Gastrodia elata	1.990
	SRR5643525	five period of Gastrodia elata	1.990
	SRR5643528	five period of Gastrodia elata	0.970
	SRR5643658	five period of Gastrodia elata	1.530
	SRR5643659	five period of Gastrodia elata	3.620
	SRR5643660	five period of Gastrodia elata	3.980
	SRR5643661	five period of Gastrodia elata	5.930
	SRR5643662	five period of Gastrodia elata	6.880
	SRR5643663	five period of Gastrodia elata	3.540
	SRR5643664	five period of Gastrodia elata	5.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.330
SRP279888	Gastro	Gastrodia elata tuber	3.87
	Juven	Juvenile tuber	2.76
	Mother_Gastro	Mother tuber of Gastrodia elata	3.83
	Mother_Juven	Mother tuber of Juvenile	3.91