Detail information of GWHGAAEX001545/evm.TU.scaffold_11.145
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 3.00E-24 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 5.00E-171 | H+/oligopeptide symporter |
| nr | gi|672156735|ref|XP_008798051.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 5.8-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LFR1|PTR50_ARATH | 2.00E-171 | Protein NRT1/ PTR FAMILY 5.8 |
| trEMBL | tr|M0T0N8|M0T0N8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P22130_001} |
| TAIR | AT5G14940 | 5.00E-171 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 6469147 | 6474642 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001545
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 77 | 482 | 5.10E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.550 |
| SRR2545915 | Juvenile tuber | 0.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.520 |
| SRR5643514 | five period of Gastrodia elata | 2.000 | |
| SRR5643515 | five period of Gastrodia elata | 1.600 | |
| SRR5643524 | five period of Gastrodia elata | 1.450 | |
| SRR5643525 | five period of Gastrodia elata | 2.830 | |
| SRR5643528 | five period of Gastrodia elata | 1.590 | |
| SRR5643658 | five period of Gastrodia elata | 1.550 | |
| SRR5643659 | five period of Gastrodia elata | 0.590 | |
| SRR5643660 | five period of Gastrodia elata | 0.410 | |
| SRR5643661 | five period of Gastrodia elata | 0.540 | |
| SRR5643662 | five period of Gastrodia elata | 0.650 | |
| SRR5643663 | five period of Gastrodia elata | 1.140 | |
| SRR5643664 | five period of Gastrodia elata | 0.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.11 |
| Juven | Juvenile tuber | 1.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.76 | |
| Mother_Juven | Mother tuber of Juvenile | 0.86 |