Gene detail

Detail information of GWHGAAEX001550/evm.TU.scaffold_11.152

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743765285\|ref\|XP_010912858.1\|	8.21E-110	PREDICTED: F-box protein SKIP14-like [Elaeis guineensis]
Swissprot	tr\|Q9LU91\|SKI14_ARATH	5.00E-74	F-box protein SKIP14
trEMBL	tr\|M0S9T9\|M0S9T9_MUSAM	6.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P20980_001}
TAIR	AT3G26000	1.00E-73	Ribonuclease inhibitor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	6669835	6676435	-

Transcript Sequence
>GWHTAAEX001550 GGAAAGTCTGTAAATTAGTAAATTTAACGATTCCAAATTTAAGGGCGTGCGATTTGTGAGCGCACGCAAGAGCCATCCCTGCGGCACCTCCGCAATCCCCGCCTCCTCTTTTCGCAGCGCGGGACTCCAAAGCGCAAAATTCCGCTTCTCCCTCCCGAAAGCGTAGACCGCGGAAAAAATAACAGCGGCTTAATAAGACCCGTTCCTTCACCGTTATTCCTTCCCCGCATCTCTGAGCGCAGATAGGGTTTCTTCTCTTTCGAATTCCTTCAGCGCAGCGATTCTCGAGTGCGCGTCTTTACTTAAGCACGGGTGCTGCTATCTTTTTCTCTTTGATTCCTTTTATTCTACTTATTTCGGCTGTTCACGTTGGCTTCTCCAGCGAGGTCTCACCTTCGGCGATCAGAATACACATTATTTTTTCAAAGGTATTTTGCTCGGAAGCACGTGAAACCAGGCAGTCTTTAAATTCACTTCTTCTCTTAAGTACTATTCTTTGGACCATCAAAATGATGCATGAGGAGTGCAAAAGCTTCTGCTTTCATGACTGGCTAAACTGGAAGGCCAATGAAGTTTATGACTATGAACATTATGGAAGAGATGAAAAATTAAATGAAAGGAAATGGTCTTATGATCCTATTGATCTTTTGCCTGTGGATCCATTTGAGATGAACCTTGAAACTACTTTGTTTGAGATGGATTTGGGAACCAAATTATCAGCTGCAATTGCAGGTTGGATTGGTGGCAGCAATGATGATTATGAAGTGAATAGTGATGCTTTTGTTTCTGACTTGAGCTACTATTGGAACAATGAGGTTTTGTCTTCATTTGAGACACAGTTGAATCCTGGATGTCAAGCTGTTGATTTTTGTAACAGTTTCTCCGGACTAGTTTTTGATACTGGAGAGGCAAATTTTGGGGCTGAGAAAGTTCCTATTTATAGCACGAGTGATGCCACACATACTGTTTTGGGCATGAGGGATGATATTCATACTGGAGGTGAGGGGAGTTCTGTGCCTGAGGGTTTGATTTTATCTCTTGGATATTTGGGCGTTCAGGATCTTCTTTCTGTTGAAAGGGTTTGCAGGTCATTGCATACTGCTGTTCAGAGCGACACCTTGTTATGGAGATGTATTCAGATTGACACGCCTTTGAGTGAGAAACTAACAGATGATGGTCTTTTTCAGCTGACACAGAGGGCCCAGGGAAACCTACAATCTTTGAGTTTGATGGGATGCCCAAGGATCACTGATACTGGCTTAAAGCGGGTGCTAGGCAGCAATTTGAAGCTTAAAAAGTTAAGCGTACCTGGGTGTCTAAGGTTAAGTGTCAATGGCCTCATTAACAGTCTCAAGGATCTCAAGCTGCCAGCGATAAAAACCCTAAAACTTGGGAGTCTATTCATTGCATCCCCAAAGCAATTCGGAGAGCTAAGAAGCCTTTTAGTGGGTACAACAACAGATGAACTGCTTCAATCGAAAGCTCATAAACTGAAATTCTATCACAACATATCCTGCCAAACACACGATGATGATGATGATGATGAAGATTGCATCGATATTGAATTGTGCCCTATTTGTCGGAGGTACAGGCTTGTATTTGATTGTCCATTAGAAGGCTGCCGCAAAAGGGGGGCAGAACAGTGCAGAGCATGCAATGTTTGCATACCGAGGTGCCAGCAGTGCGGGCGGTGTATCAACAATTGCGAATACATGGAGACTTTTTGTTTGGAATTCGTCTGCTTGACCTGTTGGAGGGATGTTTCAAATGAGGAGGAAATGCTGCTGTTAGAGAAATGAGGCAATCCAAATTCAGATATTTTGGACTTGAAACTTTATGGAATGCGTGTTTGGAGTATATCTATAATTCTTAATACTGTTGTTCCTTATCTTTAAGAGGCTATGCCAGTCAAAAAAGAAAGAAAAAAAGTTAAAAAATGAATGGAAAAATAAAAAAAAAAAGAGAGGAAAAGAATACTACTATTTGCTTGCTGTTTCTTACTGGCTTTAGTTACAGTTGTTCCAGTCTTCTTCAGAGAGTTGTGTGCCAACATTATGTTAAAAAAAAGATTGTGGAAAACCATATGGAACGAGAACGAAAAGATTAGGAAAAAAAGGGTCAATTGATGCTTTACTCCTTTATTGCCTGTTATGATGGAGGCCAGTGACTGATCAAGGCGTTTCTTCATACCTGAACATAGCCATCGTTATTTTGGCTTTCTCCTATATTAAGCCTCTCTTTTTCTGTCACTTTTGAACTATGTTATGCTGCAAGTACTATGATAAGGTGGACTTGGAAGTTTTATAATTCTCAACAACGGTTAAATTTGATGTAATTGACTGTGACCACTTTTTAATTATTTTCTTGGAGAAGCTTAACTTCACTAATATATGATTTGCTTAGTAATTGTATATGACATTAAATGTTGTATTTGAAGTGCTGTTCAAAATCGGATCATCCGCCTACAAGCTGAAATTGTAAGAAGATTTCTCTTCAGTTCAGTTCATAACATCTTTCATGTCTTCGTGAGTCATCATATTTCTATTCCTACCTCAAACTTGCAACCAGGTTTATCTTATTCGTATGGTTAAAGTTCAGTAGCG

Network for GWHGAAEX001550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	174	209	1.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.040
SRP064423	SRR2545915	Juvenile tuber	43.140
SRP108465	SRR5643513	five period of Gastrodia elata	29.000
	SRR5643514	five period of Gastrodia elata	22.580
	SRR5643515	five period of Gastrodia elata	26.800
	SRR5643524	five period of Gastrodia elata	22.700
	SRR5643525	five period of Gastrodia elata	35.880
	SRR5643528	five period of Gastrodia elata	39.280
	SRR5643658	five period of Gastrodia elata	36.190
	SRR5643659	five period of Gastrodia elata	31.050
	SRR5643660	five period of Gastrodia elata	33.320
	SRR5643661	five period of Gastrodia elata	29.110
	SRR5643662	five period of Gastrodia elata	29.820
	SRR5643663	five period of Gastrodia elata	30.970
	SRR5643664	five period of Gastrodia elata	30.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.740
SRP279888	Gastro	Gastrodia elata tuber	28.73
	Juven	Juvenile tuber	18.06
	Mother_Gastro	Mother tuber of Gastrodia elata	36.49
	Mother_Juven	Mother tuber of Juvenile	36.47