Gene detail

Detail information of GWHGAAEX001553/evm.TU.scaffold_11.156

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116621240\|ref\|YP_823396.1\|	5.00E-34	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
KOG	KOG0583	0	Serine/threonine protein kinase
nr	gi\|672133745\|ref\|XP_008790506.1\|	0	PREDICTED: CBL-interacting protein kinase 1-like [Phoenix dactylifera]
Swissprot	tr\|Q0D4B2\|CIPKL_ORYSJ	0	CBL-interacting protein kinase 21
trEMBL	tr\|M0S2V8\|M0S2V8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P25010_001}
TAIR	AT1G48260	0	CBL-interacting protein kinase 17

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	6999260	7002899	-

Transcript Sequence
>GWHTAAEX001553 TAAAATAGAAATACAAATGAAATTGCCATAATAAGTTTTTTTTAGGGTCCCCTCATTAAAAAAAAGGAAAAATAGTTACTAATTAAGTTTTTTGGCGGGTATAATAAGCGTTTAACAAAAATGTTGTGGGGATTGAGTGGCCTACTTTTGAAGGCCATGGCTTTGAATACGTTACCTTTTTTCTTCTGGTAGGGGCAGGCGAAGCTCACGTGGAAAATGATTAATTTGTTATTGTAACGGAGAGTACTCCCAAAATTTCCTCAATATTGCTCCAATTGACCGGATGATTACTATCATAAGAGATGAGGGCTCATTAATAATTTCTTTCTACAACATTACAGTACTCTGTAATTGCATTGGCTTCGCTGAGATCCGAGAAATTCCGGGCGCAGCTGCGCTTATCGGAAATTCCTGGATTCAGAAGCTGGGGCTAGCTTCAAAGAATCTGCTGCAATTTTCGGAATGAAGCATGGCAAATATGAGCTCGGGCGGACGCTGGGTGAAGGAAATTTCGGCAAGGTGAAATTTGCGAGGAGGATCGACACAGGCGAAGCATTTGCTATCAAAATCCTCGATCTAAAGAGGATTCTCGATCTGAAGATCCACGAGCAGATAAAGAGGGAGATCGCAACGCTCAAGCTTCTGAAACACCCCAATGTCGTCCGACTCCATGAGGTCTCTGCGAGCAAAACCAAAATCTTTATGGTGTTTGAATACGTCAATGGCGGCGAGTTATTTGATGAAATAGCCACGAAAGGGAGGCTCTCAGAGAAGGGAGGTCGCAAACTTTTTCAGCAGTTGATCGACGGCATAAGCTACTGCCATGATAAAGGAGTGTATCACAGAGACTTGAAGCCAGAAAACGTTCTTATTGATGCAAGTGGCAATATAAAGATATCCGATTTTGGACTGAGTGCTTTATCCCAACATCTAGGGGACGATGGGCTGCTGCATACTACCTGTGGGAGTCCCAATTACATCGCTCCCGAGGTTCTTGCCAACAGAGGCTATGATGGAGCCATTTCAGATATATGGTCTTGCGGCGTTGTTCTTTATGTCATCCTTACTGGAACTCTTCCATTTGATGATCGAAATCTCGCTGTTCTTTATCAAAAGATTTTTAAAGGAGATGCTCGAATGCCCAAATTCCTTTCTCCTGGAGCTCAAAACACGCTGAGGAGGATTCTGGATCCAAACCCCAGGACTAGGTTAAATGTAGGCCAAATCAAGGAAGATGCTTGGTTCAAACTTGATTATTCTCCGATTGCTCCTCACGATGATGATGAATCCCTCGTGCTAATAGAGTCCAACATGGCAGAAGAGCGCAATAGCAACACGCCCTCTCCAATCAATGCGTTCGGCCTCATAGGAATGTCTTCCTGCCTCGATTTGTCGGGCTTCTTTGAGAAAGAGGATGTCTCCGAGAGGAAAGTCAGGTTCACTTCAAACCATACGCCCATTAATTTGTTCGAGAGGATCGAAGAAATCACCATGGCAATGGGCTTCGAAGTTCAAAGAGCAAACAGAAAGCTGAAGGTCATGCAGCAAACCAGAGTCTCTGCAGCAGCATCAAGGAGTACAGGCTCTCTATCTGTAGCCGCTGAGGCATTTGAGCTGAGCCCATCCCTTTGCGTTGTGGAACTTCGAAAATCGTATGGAGATTCTTCGTTGTACAGACAGTTATGCTCTAAGATATCAGAAGAATTGGGTTTGTATAAACGCGATCGATTTTTGAAGGCTCCAGAGATACACCATTGCGATGGGGATACATCTGTCATCGGGGCATAATTTTTTACTTGGTTGCTAACTCTCTCACACATTTCTTTCTTTTGTTATTTTCTTTGAAAAAGGATGTGCCAATTTTTTTTATATGCAAAAAATGTGCATCAAGTGCATTACGTTTCTTTGCTCTGTGAAAATTAGTGTGGCATATTCCCAACAAATTTCCTACGAAGATTAGTCAAGCAAGCTCTTGGCGCTGTGAAAATTTGTGTTCTTAACACATTTATATCTCCGAAAATATGTTTTGATC

Network for GWHGAAEX001553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	6	261	1.50E-68
PF03822.13	NAF	293	351	8.10E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0007165	Biological Process	signal transduction
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.470
SRP064423	SRR2545915	Juvenile tuber	3.430
SRP108465	SRR5643513	five period of Gastrodia elata	1.970
	SRR5643514	five period of Gastrodia elata	2.830
	SRR5643515	five period of Gastrodia elata	3.750
	SRR5643524	five period of Gastrodia elata	4.660
	SRR5643525	five period of Gastrodia elata	6.450
	SRR5643528	five period of Gastrodia elata	33.320
	SRR5643658	five period of Gastrodia elata	6.110
	SRR5643659	five period of Gastrodia elata	1.960
	SRR5643660	five period of Gastrodia elata	1.480
	SRR5643661	five period of Gastrodia elata	2.110
	SRR5643662	five period of Gastrodia elata	2.650
	SRR5643663	five period of Gastrodia elata	2.110
	SRR5643664	five period of Gastrodia elata	1.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.240
SRP279888	Gastro	Gastrodia elata tuber	1.81
	Juven	Juvenile tuber	0.93
	Mother_Gastro	Mother tuber of Gastrodia elata	265.61
	Mother_Juven	Mother tuber of Juvenile	65.12