Detail information of GWHGAAEX001555/evm.TU.scaffold_11.159


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-95FOG: PPR repeat
nrgi|672115956|ref|XP_008781131.1|3.14E-178PREDICTED: pentatricopeptide repeat-containing protein At4g01990, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q9FZ24|PPR4_ARATH6.00E-96Pentatricopeptide repeat-containing protein At1g02370, mitochondrial (Precursor)
trEMBLtr|M0RPI6|M0RPI6_MUSAM6.00E-164Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05060_001}
TAIRAT1G023702.00E-95Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001372174247235942-
Transcript Sequence

Network for GWHGAAEX001555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1491773.40E-05
PF13041.5PPR_21812285.70E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.150
SRR2545915Juvenile tuber51.470
SRP108465SRR5643513five period of Gastrodia elata29.050
SRR5643514five period of Gastrodia elata27.660
SRR5643515five period of Gastrodia elata29.730
SRR5643524five period of Gastrodia elata29.080
SRR5643525five period of Gastrodia elata39.670
SRR5643528five period of Gastrodia elata46.060
SRR5643658five period of Gastrodia elata35.780
SRR5643659five period of Gastrodia elata52.860
SRR5643660five period of Gastrodia elata51.210
SRR5643661five period of Gastrodia elata47.440
SRR5643662five period of Gastrodia elata49.750
SRR5643663five period of Gastrodia elata50.620
SRR5643664five period of Gastrodia elata43.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.080
SRR6049655Rhizomagastrodiae_C368-T10_good_119.800
SRR6049656Rhizomagastrodiae_C368-T07_good_134.280
SRR6049657Rhizomagastrodiae_C368-T07_good_134.880
SRR6049658Rhizomagastrodiae_C368-T04_good_142.510
SRR6049659Rhizomagastrodiae_C368-T04_good_149.480
SRR6049660Rhizomagastrodiae_C368-T01_good_134.680
SRR6049661Rhizomagastrodiae_C368-T04_good_136.700
SRR6049662Rhizomagastrodiae_C368-T01_good_134.160
SRR6049663Rhizomagastrodiae_C368-T01_good_142.390
SRR6049664Rhizomagastrodiae_C368-T10_good_131.950
SRR6049665Rhizomagastrodiae_C368-T10_good_131.950
SRP279888GastroGastrodia elata tuber 37.18
JuvenJuvenile tuber23.94
Mother_GastroMother tuber of Gastrodia elata 21.83
Mother_JuvenMother tuber of Juvenile 19.73