Detail information of GWHGAAEX001556/evm.TU.scaffold_11.164
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320103072|ref|YP_004178663.1| | 3.00E-77 | 6-phosphogluconate dehydrogenase [Isosphaera pallida ATCC 43644] |
| KOG | KOG0409 | 1.00E-100 | Predicted dehydrogenase |
| nr | gi|596173550|ref|XP_007223168.1| | 2.09E-133 | hypothetical protein PRUPE_ppa009081mg [Prunus persica] |
| Swissprot | tr|Q9SZE1|3HID1_ARATH | 4.00E-101 | Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (Precursor) |
| trEMBL | tr|M5XE29|M5XE29_PRUPE | 8.00E-134 | Uncharacterized protein {ECO:0000313|EMBL:EMJ24367.1} |
| TAIR | AT4G29120 | 1.00E-100 | 6-phosphogluconate dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000013 | 7468235 | 7469424 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001556
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03446.14 | NAD_binding_2 | 23 | 180 | 2.90E-38 |
| PF14833.5 | NAD_binding_11 | 185 | 302 | 2.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00020 | mmsB, HIBADH | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0050661 | Molecular Function | NADP binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.350 |
| SRR5643514 | five period of Gastrodia elata | 10.180 | |
| SRR5643515 | five period of Gastrodia elata | 7.150 | |
| SRR5643524 | five period of Gastrodia elata | 9.580 | |
| SRR5643525 | five period of Gastrodia elata | 4.740 | |
| SRR5643528 | five period of Gastrodia elata | 7.310 | |
| SRR5643658 | five period of Gastrodia elata | 4.070 | |
| SRR5643659 | five period of Gastrodia elata | 7.090 | |
| SRR5643660 | five period of Gastrodia elata | 7.800 | |
| SRR5643661 | five period of Gastrodia elata | 12.000 | |
| SRR5643662 | five period of Gastrodia elata | 9.550 | |
| SRR5643663 | five period of Gastrodia elata | 7.250 | |
| SRR5643664 | five period of Gastrodia elata | 8.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.49 |
| Juven | Juvenile tuber | 5.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.86 | |
| Mother_Juven | Mother tuber of Juvenile | 8.45 |