Detail information of GWHGAAEX001558/evm.TU.scaffold_11.166


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-98FOG: PPR repeat
nrgi|672115956|ref|XP_008781131.1|5.73E-153PREDICTED: pentatricopeptide repeat-containing protein At4g01990, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q93WC5|PP300_ARATH5.00E-99Pentatricopeptide repeat-containing protein At4g01990, mitochondrial (Precursor)
trEMBLtr|M0RPI6|M0RPI6_MUSAM3.00E-134Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05060_001}
TAIRAT4G019902.00E-98Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001374800677483575-
Transcript Sequence

Network for GWHGAAEX001558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1511782.20E-06
PF13041.5PPR_21832291.60E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.190
SRR2545915Juvenile tuber7.620
SRP108465SRR5643513five period of Gastrodia elata5.740
SRR5643514five period of Gastrodia elata6.910
SRR5643515five period of Gastrodia elata5.950
SRR5643524five period of Gastrodia elata6.570
SRR5643525five period of Gastrodia elata8.020
SRR5643528five period of Gastrodia elata5.050
SRR5643658five period of Gastrodia elata9.500
SRR5643659five period of Gastrodia elata7.310
SRR5643660five period of Gastrodia elata7.770
SRR5643661five period of Gastrodia elata6.850
SRR5643662five period of Gastrodia elata7.710
SRR5643663five period of Gastrodia elata9.680
SRR5643664five period of Gastrodia elata6.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.020
SRR6049655Rhizomagastrodiae_C368-T10_good_14.950
SRR6049656Rhizomagastrodiae_C368-T07_good_19.910
SRR6049657Rhizomagastrodiae_C368-T07_good_19.860
SRR6049658Rhizomagastrodiae_C368-T04_good_18.420
SRR6049659Rhizomagastrodiae_C368-T04_good_110.780
SRR6049660Rhizomagastrodiae_C368-T01_good_19.620
SRR6049661Rhizomagastrodiae_C368-T04_good_18.880
SRR6049662Rhizomagastrodiae_C368-T01_good_18.690
SRR6049663Rhizomagastrodiae_C368-T01_good_19.730
SRR6049664Rhizomagastrodiae_C368-T10_good_17.680
SRR6049665Rhizomagastrodiae_C368-T10_good_17.680
SRP279888GastroGastrodia elata tuber 4.67
JuvenJuvenile tuber7.13
Mother_GastroMother tuber of Gastrodia elata 3.77
Mother_JuvenMother tuber of Juvenile 4.06