Gene detail

Detail information of GWHGAAEX001559/evm.TU.scaffold_11.167

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|315499759\|ref\|YP_004088562.1\|	1.00E-89	dead/deah box helicase domain protein [Asticcacaulis excentricus CB 48]
KOG	KOG0339	0	ATP-dependent RNA helicase
nr	gi\|743844062\|ref\|XP_010938236.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Elaeis guineensis]
Swissprot	tr\|O22907\|RH24_ARATH	0	DEAD-box ATP-dependent RNA helicase 24
trEMBL	tr\|A0A0A0KTB5\|A0A0A0KTB5_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN52865.1}
TAIR	AT2G47330	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	7885622	7901852	+

Transcript Sequence
>GWHTAAEX001559 CTAGGTTTTTCTTTTCCAATACCTAAAATGTCGAAACGAAAGTTTGGCTTCGAGGGCTTTGGCATCAACCGCCCGGCCACCTACAACTTTGAGCGTTCCGACCCGCCGGCGCGCCTATACGTGCCGCCCTCTTCCCGCCGTCGTGGTGGGGACAATTATGAGGACCAGGACCTGGACAATATCGAGTACGATGCTCCCGAGCTCCGATCAGACGACGGAGAAGGAGACACCGGCGGACCCGTTGAAGTTGAAGACGAGATTGATCCGCTCGACGCCTTCATGGAGGGGATCCAGGAGGAGATCCGGGCTCCACCGCTTCCCTCCGCTGGGAAGGCTAAGGATAAGGACGGCAGGTTTCTGGATGATGACGAGGATGATCCCATGGAGATGTTTTTGAAAGCAAAGAAGGATGCGGTGCTTACCCTAGCAGCGGAAGCTCTTAATGCTGGGTACAATTCCGATGAGGAAGTGTACGCTGCTGCAAAAGCTGTGGATGCTGGGATTCTTGAGTACGATTCGGACGATAACCCCATCGTTGTGGATAAGAGGAAGATTGAGCCTATTCCGGCGTTGGAGCATAGTTCGATTGATTATGATGCGTTCAATAAGGATTTCTACGATGAAAAGCCATCTATATCTGGAATGAGTGAGCTGGATGTTACTGAATATCGAAAAAGCTTGGCAATTCGAGTTTCAGGGCTTGATGTACCAAAGCCAATAAAAGCCTTTGCAGACTGTGGGTTTTCTAACGTGTTATCGAATGCGATAGCCAAGCAGAGTTACGAGAAGCCAACGCCAATACAATGCCAGTCTCTTCCTATCGCACTGTCCGGACGAGATATTATTGGCATCGCAAAAACAGGTTCTGGAAAAACAGCCGCCTTCATACTGCCAATGATCGTCCACATAATGGACCAACCTGAATTGAAGAAGGAAGAGGGTCCTATTGGTGTGGTATGCGCTCCTACAAGAGAATTAGCTCATCAAATATACCAGGAAGCAAAAAAGTTTGCTAAGGCTCACGGCCTGCAGGTCGCTGCTGTCTATGGCGGAGTCTCCAAGTATGACCAGTTAAAAGAACTTAAGGCTGGATGCGATATCGTTATTGCTACTCCAGGCAGGCTTATAGACATGCTGAAGCTGAAATCCCTAACAATGCTCAGAGCCACTTTCCTTGTTCTTGATGAGGCAGATCGGATGTTCGATCTTGGGTTTGAGCCGCAGATACGATCGATAGTGGGCCAAATAAGACCGGACCGGCAAACCTTACTCTTCTCTGCAACCATGCCTCGCAAAGTCGAGAGGTTGGCTCGAGAAGTCCTCACTGATCCCATTAGGGTTACTGTTGGTGAGATCGGAATGGCCAATGAGGACATCACCCAAATTGTTCATGTGATCCCTTCTGATGCAGAGAAGATGCCATGGCTTCTTCAGAAGCTTCCCGGGCTAATTGACGATGGTGATGTTCTTGTATTCTCATCGAAAAAGGCTACTGTGGATGAGATTGAATCCCAGCTGAGCCAGAAGGGTTTCAAGGTGGCAGCGCTTCATGGTGATAAGGATCAGGCATCCCGTATGGAAACCCTGCAGAAGTTCAAGTCCGGGTTTTACCACGTCCTCATTGCCACCGATGTCGCCGCTCGTGGACTCGACATTAAATCGATCAAGTCAGTAGTTAATTTTGATACAGCCAGAGATATGGATATGCATGTTCATCGCATTGGAAGAACGGGCCGTGCTGGTGACAAAGATGGAACAGCTTACACCCTTGTTACACACAAGGAAGCACGCTTTGCCGGAGAGTTGGTCAACTGTTTGATCACTGCCGGGCAGAATGTTTCCAATGAGCTAATGGATCTTGCAATGAAGGATGGGCGATTCAGGGCGAGACGCGACGCAAGGAAAGGCGGGAAGAAGAGTGGAAGAGGGAAAGGCGGAGGCGGAGGAGGTGGCGGAGGCGGCGGAGGGCGCGGTGTTCGTGGTGTTGACTTTGGATTGGGCATTGGCTATAATCCCGAGTCTGCAAACATGTCTCAAGCTGCTGCTACTGCTACTACTGCTACTGCTTCCAGCAGATCAGCTGCTGTTAATTCTCTGAGGAGCGGGATGATGGCGCAATTCAGAAGCAACTTTGTTGCTGCTTCTTCTAATAACTCCCAAAACGATGCTATTAGAGCTTCGAGACCTGCGTTGCCTGGTTTTGTTTCCGGCGGTTCCATCGGCGGGGAACCCTACAAGGCTGCTTCGGCAGGCAGTATCGGTCAGAATGGAAGCCAGAAGAATTCTGATAGCGATAAGCCGAGGGAAAGGAAGCGGCCTTCCGGATGGGATAGATAGCTTTGGGGATGCATTTAAAACGCCCAAAATGCACTTAGGTTATAACTTTATAGTGAGCATGCTTTATGGTAGCCGAAGTGCTTCTTCCCATTCCTTTCACTATTCTTAAATTGGGCTTATAAGGCTTTTTATTACGTTAGTTATATTAGTTAGATTTATTCTGCCCTTTCTAACGCTGTTTTTTTAGCTGGCAGGAAGTATTATTTCTAAGAAAGATAGCAGCAGGAATTGTCTTATGCTATGCTATGATGATGCACTCAATTTGCCTTTATAAAGAAACAGACGTGTATGGGAAAATAAAAAGAGGGCATTTGTAGGCTTTATATTAATTGTGTATTATAATAGCTTTTGCTAAAATTGATATTTAGAAAGAATTTTCTGAAAATGTTTGGCTTGTTTTTAATACTGATAATATCAAAATGTAAATTTTAATTCA

Network for GWHGAAEX001559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	256	427	1.00E-52
PF00271.30	Helicase_C	476	572	3.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12835	DDX42, SF3B125	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.070
SRP064423	SRR2545915	Juvenile tuber	23.860
SRP108465	SRR5643513	five period of Gastrodia elata	29.650
	SRR5643514	five period of Gastrodia elata	27.580
	SRR5643515	five period of Gastrodia elata	25.650
	SRR5643524	five period of Gastrodia elata	29.590
	SRR5643525	five period of Gastrodia elata	28.740
	SRR5643528	five period of Gastrodia elata	27.550
	SRR5643658	five period of Gastrodia elata	32.920
	SRR5643659	five period of Gastrodia elata	24.100
	SRR5643660	five period of Gastrodia elata	27.650
	SRR5643661	five period of Gastrodia elata	26.000
	SRR5643662	five period of Gastrodia elata	27.390
	SRR5643663	five period of Gastrodia elata	27.070
	SRR5643664	five period of Gastrodia elata	24.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.940
SRP279888	Gastro	Gastrodia elata tuber	29.01
	Juven	Juvenile tuber	38.16
	Mother_Gastro	Mother tuber of Gastrodia elata	31.31
	Mother_Juven	Mother tuber of Juvenile	33.83