Gene detail

Detail information of GWHGAAEX001560/evm.TU.scaffold_11.170

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|392412582\|ref\|YP_006449189.1\|	1.00E-08	K+ transport system, NAD-binding component [Desulfomonile tiedjei DSM 6799]
KOG	KOG1418	8.00E-143	Tandem pore domain K+ channel
nr	gi\|743794060\|ref\|XP_010924086.1\|	2.24E-172	PREDICTED: two pore potassium channel c-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SVV6\|KCO6_ARATH	2.00E-143	Two-pore potassium channel 3
trEMBL	tr\|I1KRD8\|I1KRD8_SOYBN	3.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G08710.1}
TAIR	AT4G18160	8.00E-143	Ca2+ activated outward rectifying K+ channel 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	8014745	8024773	+

Transcript Sequence
>GWHTAAEX001560 AAATCATCCGGCAAAGAAATAATTGTTTCACTTTTATGTGTGTACCCAGGAGATCCCGATTCCCGAAATTTTACTCAACCTCAAAACCTTCCTAGGCGAAAATTCTGAAAAAATTGATTTCGAACCTCTATTGGTACCTCTGTACCTTCCATGTCCAAAGAGCCGCTGCTTCCAACGGTTGCCGTCGTCGCCTCCGGAGGCGGGGCCGCTGTACCACACTCCCGCCGGCGAAACCTCTCTTCATCTAACGCATGTTCTCCTCTCTGCTCTCTACCTGAGCACGGCGAGGTCTCGCTCCCTATCTCCCCTTCCTCCCTCAAAGACCGAATAATCTTTGGACCTTCCCCTTCATCGGAATCACTCTACGAAACCCTAACTCTAATCCCCTCAGCCTCACCTCTTCATTCTCCTTCCCACTCTCCCCCGTCTCTCGCCCTCTCCGATTCCGTTGCCCTCGCCAACGGTGACGCCGACGGCACCTCAGATTGCCCGTTGCCTGCCGATCCTCTCCACTGCAAGGCGGCTCGCAGCTACTTCCACCGCTCGCACACAGCCCCTGCCATGTCCAATATAGACAACATCGCCAACAATCCCGACCCTAGCACCAAATCTTCAACGGCGGGAAACCGTGATTCTCGGATCATCCGCAACGCCTTCGTCATCCTTGGTGGGTACCTTGTCTTCGGCGTGCTCATGTACTCCCTCAACCGCTCTGATTTCTCGGCTAAGGAAACACACCCGGTCGTCGATGCCCTCTACTTCTGCATCGTGACCATGTGCACAATCGGCTACGGCGACATCACGCCTGCCTCCACCGCATCCAAAATATTCTCTATTGCTTTCGTTCTCATTGGCTTCGGCTTCATCGACATTCTTCTCTCCGCCATGATCTCTTACGTGCTCGACGTGCAGGAGCATCATCTTCTCGACGCGGCGAAGCATCGAGCGCAGGGAAGCAAGCTGGACGCCCCGTCTTACATCATCGATCTGAAGAAGGGGCGGATGCGAATCCGGCTTAAGGTTGCACTAGCCCTTGGTGTGGTCGTGCTCTGCATCTGCGTTGGAGCGGCGTTCTTGCAATTGTTTGAGAATTTGAGCTGGCTCGATGCTTTCTACCTCTCAGTGATGTCGGTGACTACAGTGGGGTACGGAGATAAGGCTTTTATGACCTTGGGAGGACGGATTTTCGCATGCGTATGGCTGCTCGTGTCTACGCTCGCGGTGGGACGGGCGTTTCTGTATCTGGTGGAGGCGAGGATGGATAAGCGCAACAGGAAGATCGCTAAGTGGGTGCTTGCTAGGAACTTGACTGTTTCTGAGTTTCTTGAGGCTGATATTGATAACAATGGCTTTGTGAGCAAGTCGGACTTCGTTGTGTACAAGCTGAAGGTGATGGGGAAGGTTGCAGAGAAGGACATCCTGCAGATCTGCGACCAATTCGACAGAATGGACAGCGGCAACTGCGGGAAGATCACGCTTTTTGATCTCATCGAGAACAATAAAAAGTGTGATCCCATTTTGAACCACGACATAAAAGACTAAAGATCTGCTGCACATTGGCTTTTTTAGATTTTTCAACTTCCGCTAAGAAGGCAACCAAAACTCTCAAAAAAATGGGAGATGTGTCGTCGTCTACTTGGCATTTTTCTTCTCATAAATGTTGCGGTAAATTTGATCCGCACATTTTTGCTGTAATTAATTTGTGAATGTTACAGACACTGGAGTTGGATGGTAACTATATAGAAGGCCAAGGCTTTATATTGGTAC

Network for GWHGAAEX001560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07885.15	Ion_trans_2	171	250	7.20E-16
PF07885.15	Ion_trans_2	297	366	2.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0071805	Biological Process	potassium ion transmembrane transport
GO:0005267	Molecular Function	potassium channel activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.190
SRP064423	SRR2545915	Juvenile tuber	3.860
SRP108465	SRR5643513	five period of Gastrodia elata	11.470
	SRR5643514	five period of Gastrodia elata	13.540
	SRR5643515	five period of Gastrodia elata	12.380
	SRR5643524	five period of Gastrodia elata	11.290
	SRR5643525	five period of Gastrodia elata	19.280
	SRR5643528	five period of Gastrodia elata	15.270
	SRR5643658	five period of Gastrodia elata	23.000
	SRR5643659	five period of Gastrodia elata	10.460
	SRR5643660	five period of Gastrodia elata	9.970
	SRR5643661	five period of Gastrodia elata	11.560
	SRR5643662	five period of Gastrodia elata	10.800
	SRR5643663	five period of Gastrodia elata	10.820
	SRR5643664	five period of Gastrodia elata	10.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.150
SRP279888	Gastro	Gastrodia elata tuber	9.82
	Juven	Juvenile tuber	17.36
	Mother_Gastro	Mother tuber of Gastrodia elata	25.78
	Mother_Juven	Mother tuber of Juvenile	15.00