Gene detail

Detail information of GWHGAAEX001561/evm.TU.scaffold_11.175

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1847	5.00E-109	mRNA splicing factor
nr	gi\|743757737\|ref\|XP_010923396.1\|	0	PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0TMD6\|M0TMD6_MUSAM	2.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P03830_001}
TAIR	AT5G55100	5.00E-109	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	8388349	8432095	+

Transcript Sequence
>GWHTAAEX001561 ATGGTACCTGCAACGGACGGCTACAAGAGTTCAAGGCAATTTTTGGCTTCTCCTGAGGGTGTTAGGTTTCGGGATGACTCCACATCAGTTCCTCGATGGAAGATGAACAGTGCCATGTGGGTTGGCTCGACCAGCGTGCCCCTGTCCATCGGGCCTGCGCATGCGGTCGACCTGCATGCGTGCACTGGCAGCAGGCCCGTACGGTTTCAGTCATTTTTTTCAGTTAAGGGAAACAAACGATCAGCAGCCGCCATGAATCTGGAGGTGGATGGTCGGCACGCGTTGCTGTTTGACGACGACGTGACAGCGACTTTCGTCAACTCCCGCGAGGCGCTCGTTCCATGGAATCAGGACGCTTCTCTTCTCATCGATCGTTATGACGTACGCCATCTACTTGATCGGATTCCACCACGACCGGAAACTTCTACTTGGAGGCGGCGCCAGCTCGATGATGGCTGCGATGCAGTCTTACTGGCCGAACTCGACGGCGAGCGATATCGGGATCTTCCTCTTCTTGGAGACAAAGGGAGAAAAGATCTTATTCCAGAAACTAGGGAAAGATCAGAAGCAACAGATGCTGGTGCTTATCAAGCGGTTCTATTTTCATATGATGAAAAAAATGAGTCAACTGTTTGTCACAATACTGAGTATCATTCTTGTTTTCGTCCACCATTTGAAGTGCCAGAATTTCTTCACAACCACCTACCTCCTACCGAGAAGCTGCACCAAATAATGGCAAGGACTGCAATTTTTGTTAGTGTTCATGGTGGCCAATCGGAGATTGTCCTACGGGTCAAACAAGGAGACAATCCAACATTTGGTTTCTTAATGCCAGATCACCACTTACATGTCTACTTTCGATATCTTGTTGATCATCCTCAATTTTTGAAGCATTATACTGATTCTCCTAAAAAGGAAGAAACAACAAACCCTTGTACTTCTGAAGCTGGCGCGGCTTTGTCATTGCTTGGTTCTGTGTATGGTACTGGAGATGATGATGATTTTATTCATCAAACTGAGACTAAAGCAAATGAGGCACATAATTTGGTTGCTGCTGGTAATGCAGCAATTCCAGTGACATCAGAAATTGGTGAGTTTACTGCGGCCGCCTTAGGAAATAAAGAAGCTATTAAACAACAATCTTATGTTGTTACTGCAGAAAAACCTTTGTCACTTAAGAAAGTATTTCTTGGAAATGTTCCTACTGTTGCTTCTAGCAGAAAGTCAGGGGATGCTGGCTTTTTGCTTGCAAAAGAAATTGAAGAAAGTTCTCAGAAAGGCACAGATGATTTAAAAGCATCAATCCTTGAGCCTCCAGCTTTTATGAAGAGTACCATAGAAAAAATAGTTGAATTTATTGTTAGGAATGGTAAACAATTTGAGGCAGTACTTATTGAACAGGACAGGAATATTGGAAGATTTCCATTTCTTTTTTCAACCAATCAATATCACTCCTACTACTTGAAGATATTTGAAGAAGCACATGAGTCGAAGATCCAAGGAAAAGATCTTTTTGTTCAGAAACACGATGCAGAGCACCATGGAGGGAACAGACAGAAAAAGGTCCAAAGCCATGGAAAGGACACAAAAAATGTAAATGTTAGGGATAGGTCCGAGTTTTCCGATGGGGTTTGCTCTTATGACTATGAGAGGAAGGAAAAGTTCAAGATGGTTTTGGGTGGGCAGAAAAAGGATTCACAGGACCAACAATCCAAAGTTACCAAGCCTTCTGCATTGAGTTCAGATGAAGCTGCTGCTATCGTTCTTTCTGTAACAAAAGGCATCAGTCCTGCAAATGCCAGCACCCTATGCAAGAAATCAAATGATGATGGCAGCAGACGCACGAATAAAAACTGTGGAGCTACTGCAGATGAAGCTGCTGCCATAGTCATGGAAGCAACAAGAGGGAGGAGCCCTGCCAACGCTCCACAACACTTGCTGAGAGATAATGGGAAGCGAATCTCTAATTCCAATGGCCTTTCTGGTGTATTGGTCCCTGCGCTAGAATCAACCGCCCAATCAGATAAAATGAGTGGTGATGTAACAGTTGCTACAGTCATAGCCAAAACTGCAGCGCTTGCAGCTTCAAGGGAAGCTGATTCTGCTGAATCTGGCCTGACGAAGGAGCAAAAGCTGAAGGCTGAGAGGTTGAAACGGGCAAAAATGTTTGCTGCTCTGATAAAGAACGGAAGCAGGGGCTGTGCAGGTGATATTGTGCACTCAGCTAGTCACCACAGCAGCGCAAGTTTAGAGTCTTCTGCTGGCATTTCCTTGCAGACTGGCACTGATTCTAGGACTATTGAGGCCTCAGGCACGGAGCATGAACCTTCAGTGAAGAGGCGCCTCCATTCAGGATCTGGGAAGAGTCATGATGACTCCGATGATGATTATAAGCATTCCATGAAGAAGCGTCATTCTAAAAGAAACAAGGATGAGCAAATGTGTAATAGAAGTACTCGTTCCTCCAGAGAAAGGGAGAGCCAGCATCATCACAGGTGCCACAGCTCTTCAGAAGATGATCAGAGGCGCCAAAGGAGCTCCAACCATCATCATCATTATAGGATTTACGATCAGTCTACAGAGAAATACGAAGAACAACGGCCTCGGAAGAAGCATCATTCTCATTCAAAAAGAAAGCTGGAGAGTGGAGCAACTGAAGCGTCTGATGGATTATCAGTTAGTATGGCAGGTATTATTTCTGATGGGAGAGATGTGCCTGCTTCGGATGAAAAACTGACTGCTGATGCTTCTGAGATTTCTAATGATCTCAGGGCAAAAATCCGAGCAATGCTTCTTGAGACATTGTAG

Network for GWHGAAEX001561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09750.8	DRY_EERY	87	205	2.30E-23
PF01805.19	Surp	243	291	1.20E-10
PF01805.19	Surp	444	489	3.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.210
SRP064423	SRR2545915	Juvenile tuber	34.550
SRP108465	SRR5643513	five period of Gastrodia elata	28.300
	SRR5643514	five period of Gastrodia elata	27.570
	SRR5643515	five period of Gastrodia elata	27.280
	SRR5643524	five period of Gastrodia elata	28.670
	SRR5643525	five period of Gastrodia elata	34.090
	SRR5643528	five period of Gastrodia elata	31.600
	SRR5643658	five period of Gastrodia elata	29.780
	SRR5643659	five period of Gastrodia elata	29.480
	SRR5643660	five period of Gastrodia elata	31.450
	SRR5643661	five period of Gastrodia elata	26.930
	SRR5643662	five period of Gastrodia elata	27.880
	SRR5643663	five period of Gastrodia elata	30.790
	SRR5643664	five period of Gastrodia elata	30.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.470
SRP279888	Gastro	Gastrodia elata tuber	43.34
	Juven	Juvenile tuber	35.68
	Mother_Gastro	Mother tuber of Gastrodia elata	46.89
	Mother_Juven	Mother tuber of Juvenile	41.36