Detail information of GWHGAAEX001568/evm.TU.scaffold_11.186


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262194905|ref|YP_003266114.1|1.00E-24actin/actin family protein [Haliangium ochraceum DSM 14365]
KOGKOG06762.00E-169Actin and related proteins
nrgi|743830282|ref|XP_010934377.1|0PREDICTED: actin-related protein 6-like isoform X1 [Elaeis guineensis]
Swissprottr|Q5NBI2|ARP6_ORYSJ0Actin-related protein 6
trEMBLtr|M0U5T2|M0U5T2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP02700_001}
TAIRAT3G335202.00E-169actin-related protein 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001391369479179290+
Transcript Sequence

Network for GWHGAAEX001568

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.18Actin34304.90E-104
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms66.900
SRR2545915Juvenile tuber41.300
SRP108465SRR5643513five period of Gastrodia elata33.590
SRR5643514five period of Gastrodia elata24.780
SRR5643515five period of Gastrodia elata30.520
SRR5643524five period of Gastrodia elata28.840
SRR5643525five period of Gastrodia elata29.800
SRR5643528five period of Gastrodia elata26.280
SRR5643658five period of Gastrodia elata29.360
SRR5643659five period of Gastrodia elata40.070
SRR5643660five period of Gastrodia elata41.290
SRR5643661five period of Gastrodia elata48.530
SRR5643662five period of Gastrodia elata50.840
SRR5643663five period of Gastrodia elata46.890
SRR5643664five period of Gastrodia elata56.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_152.490
SRR6049655Rhizomagastrodiae_C368-T10_good_148.890
SRR6049656Rhizomagastrodiae_C368-T07_good_141.760
SRR6049657Rhizomagastrodiae_C368-T07_good_161.830
SRR6049658Rhizomagastrodiae_C368-T04_good_151.220
SRR6049659Rhizomagastrodiae_C368-T04_good_160.140
SRR6049660Rhizomagastrodiae_C368-T01_good_148.090
SRR6049661Rhizomagastrodiae_C368-T04_good_149.330
SRR6049662Rhizomagastrodiae_C368-T01_good_134.720
SRR6049663Rhizomagastrodiae_C368-T01_good_139.280
SRR6049664Rhizomagastrodiae_C368-T10_good_131.890
SRR6049665Rhizomagastrodiae_C368-T10_good_131.890
SRP279888GastroGastrodia elata tuber 39.13
JuvenJuvenile tuber38.94
Mother_GastroMother tuber of Gastrodia elata 24.92
Mother_JuvenMother tuber of Juvenile 30.23