Detail information of GWHGAAEX001570/evm.TU.scaffold_11.189


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|657946586|ref|XP_008385462.1|5.81E-40PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Malus domestica]
Swissprottr|Q9LW00|MBD11_ARATH1.00E-34Methyl-CpG-binding domain-containing protein 11
trEMBLtr|I1KDC1|I1KDC1_SOYBN3.00E-40Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G25310.1}
TAIRAT3G157904.00E-34methyl-CPG-binding domain 11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001393149889336084-
Transcript Sequence

Network for GWHGAAEX001570

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01429.18MBD17831.70E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms85.620
SRR2545915Juvenile tuber85.010
SRP108465SRR5643513five period of Gastrodia elata86.620
SRR5643514five period of Gastrodia elata86.470
SRR5643515five period of Gastrodia elata93.090
SRR5643524five period of Gastrodia elata90.960
SRR5643525five period of Gastrodia elata150.840
SRR5643528five period of Gastrodia elata112.330
SRR5643658five period of Gastrodia elata159.730
SRR5643659five period of Gastrodia elata112.740
SRR5643660five period of Gastrodia elata124.930
SRR5643661five period of Gastrodia elata122.630
SRR5643662five period of Gastrodia elata112.120
SRR5643663five period of Gastrodia elata111.680
SRR5643664five period of Gastrodia elata143.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_170.640
SRR6049655Rhizomagastrodiae_C368-T10_good_174.160
SRR6049656Rhizomagastrodiae_C368-T07_good_169.390
SRR6049657Rhizomagastrodiae_C368-T07_good_182.500
SRR6049658Rhizomagastrodiae_C368-T04_good_175.740
SRR6049659Rhizomagastrodiae_C368-T04_good_192.700
SRR6049660Rhizomagastrodiae_C368-T01_good_168.230
SRR6049661Rhizomagastrodiae_C368-T04_good_169.760
SRR6049662Rhizomagastrodiae_C368-T01_good_150.760
SRR6049663Rhizomagastrodiae_C368-T01_good_154.020
SRR6049664Rhizomagastrodiae_C368-T10_good_166.030
SRR6049665Rhizomagastrodiae_C368-T10_good_166.030
SRP279888GastroGastrodia elata tuber 107.23
JuvenJuvenile tuber95.04
Mother_GastroMother tuber of Gastrodia elata 69.70
Mother_JuvenMother tuber of Juvenile 81.29